Coverage report: 79%

Files Functions Classes

coverage.py v7.13.4, created at 2026-02-13 09:46 +0000

File function   statements missing excluded   coverage
src / bioimageio / core / __init__.py (no function)   58 0 0   100%
src / bioimageio / core / __main__.py main   1 0 0   100%
src / bioimageio / core / __main__.py (no function)   10 1 0   90%
src / bioimageio / core / _magic_tensor_ops.py MagicTensorOpsMixin._binary_op   1 1 0   0%
src / bioimageio / core / _magic_tensor_ops.py MagicTensorOpsMixin.__add__   1 0 0   100%
src / bioimageio / core / _magic_tensor_ops.py MagicTensorOpsMixin.__sub__   1 0 0   100%
src / bioimageio / core / _magic_tensor_ops.py MagicTensorOpsMixin.__mul__   1 0 0   100%
src / bioimageio / core / _magic_tensor_ops.py MagicTensorOpsMixin.__pow__   1 0 0   100%
src / bioimageio / core / _magic_tensor_ops.py MagicTensorOpsMixin.__truediv__   1 0 0   100%
src / bioimageio / core / _magic_tensor_ops.py MagicTensorOpsMixin.__floordiv__   1 1 0   0%
src / bioimageio / core / _magic_tensor_ops.py MagicTensorOpsMixin.__mod__   1 1 0   0%
src / bioimageio / core / _magic_tensor_ops.py MagicTensorOpsMixin.__and__   1 1 0   0%
src / bioimageio / core / _magic_tensor_ops.py MagicTensorOpsMixin.__xor__   1 1 0   0%
src / bioimageio / core / _magic_tensor_ops.py MagicTensorOpsMixin.__or__   1 1 0   0%
src / bioimageio / core / _magic_tensor_ops.py MagicTensorOpsMixin.__lshift__   1 1 0   0%
src / bioimageio / core / _magic_tensor_ops.py MagicTensorOpsMixin.__rshift__   1 1 0   0%
src / bioimageio / core / _magic_tensor_ops.py MagicTensorOpsMixin.__lt__   1 1 0   0%
src / bioimageio / core / _magic_tensor_ops.py MagicTensorOpsMixin.__le__   1 1 0   0%
src / bioimageio / core / _magic_tensor_ops.py MagicTensorOpsMixin.__gt__   1 0 0   100%
src / bioimageio / core / _magic_tensor_ops.py MagicTensorOpsMixin.__ge__   1 1 0   0%
src / bioimageio / core / _magic_tensor_ops.py MagicTensorOpsMixin.__eq__   1 0 0   100%
src / bioimageio / core / _magic_tensor_ops.py MagicTensorOpsMixin.__ne__   1 1 0   0%
src / bioimageio / core / _magic_tensor_ops.py MagicTensorOpsMixin.__radd__   1 0 0   100%
src / bioimageio / core / _magic_tensor_ops.py MagicTensorOpsMixin.__rsub__   1 1 0   0%
src / bioimageio / core / _magic_tensor_ops.py MagicTensorOpsMixin.__rmul__   1 0 0   100%
src / bioimageio / core / _magic_tensor_ops.py MagicTensorOpsMixin.__rpow__   1 1 0   0%
src / bioimageio / core / _magic_tensor_ops.py MagicTensorOpsMixin.__rtruediv__   1 1 0   0%
src / bioimageio / core / _magic_tensor_ops.py MagicTensorOpsMixin.__rfloordiv__   1 1 0   0%
src / bioimageio / core / _magic_tensor_ops.py MagicTensorOpsMixin.__rmod__   1 1 0   0%
src / bioimageio / core / _magic_tensor_ops.py MagicTensorOpsMixin.__rand__   1 1 0   0%
src / bioimageio / core / _magic_tensor_ops.py MagicTensorOpsMixin.__rxor__   1 1 0   0%
src / bioimageio / core / _magic_tensor_ops.py MagicTensorOpsMixin.__ror__   1 1 0   0%
src / bioimageio / core / _magic_tensor_ops.py MagicTensorOpsMixin._inplace_binary_op   1 1 0   0%
src / bioimageio / core / _magic_tensor_ops.py MagicTensorOpsMixin.__iadd__   1 1 0   0%
src / bioimageio / core / _magic_tensor_ops.py MagicTensorOpsMixin.__isub__   1 1 0   0%
src / bioimageio / core / _magic_tensor_ops.py MagicTensorOpsMixin.__imul__   1 1 0   0%
src / bioimageio / core / _magic_tensor_ops.py MagicTensorOpsMixin.__ipow__   1 1 0   0%
src / bioimageio / core / _magic_tensor_ops.py MagicTensorOpsMixin.__itruediv__   1 1 0   0%
src / bioimageio / core / _magic_tensor_ops.py MagicTensorOpsMixin.__ifloordiv__   1 1 0   0%
src / bioimageio / core / _magic_tensor_ops.py MagicTensorOpsMixin.__imod__   1 1 0   0%
src / bioimageio / core / _magic_tensor_ops.py MagicTensorOpsMixin.__iand__   1 1 0   0%
src / bioimageio / core / _magic_tensor_ops.py MagicTensorOpsMixin.__ixor__   1 1 0   0%
src / bioimageio / core / _magic_tensor_ops.py MagicTensorOpsMixin.__ior__   1 1 0   0%
src / bioimageio / core / _magic_tensor_ops.py MagicTensorOpsMixin.__ilshift__   1 1 0   0%
src / bioimageio / core / _magic_tensor_ops.py MagicTensorOpsMixin.__irshift__   1 1 0   0%
src / bioimageio / core / _magic_tensor_ops.py MagicTensorOpsMixin._unary_op   1 1 0   0%
src / bioimageio / core / _magic_tensor_ops.py MagicTensorOpsMixin.__neg__   1 0 0   100%
src / bioimageio / core / _magic_tensor_ops.py MagicTensorOpsMixin.__pos__   1 1 0   0%
src / bioimageio / core / _magic_tensor_ops.py MagicTensorOpsMixin.__abs__   1 1 0   0%
src / bioimageio / core / _magic_tensor_ops.py MagicTensorOpsMixin.__invert__   1 1 0   0%
src / bioimageio / core / _magic_tensor_ops.py MagicTensorOpsMixin.round   1 1 0   0%
src / bioimageio / core / _magic_tensor_ops.py MagicTensorOpsMixin.argsort   1 1 0   0%
src / bioimageio / core / _magic_tensor_ops.py MagicTensorOpsMixin.conj   1 1 0   0%
src / bioimageio / core / _magic_tensor_ops.py MagicTensorOpsMixin.conjugate   1 1 0   0%
src / bioimageio / core / _magic_tensor_ops.py (no function)   107 0 0   100%
src / bioimageio / core / _op_base.py Operator.__call__   0 0 1   100%
src / bioimageio / core / _op_base.py Operator.required_measures   0 0 1   100%
src / bioimageio / core / _op_base.py BlockedOperator.__call__   0 0 1   100%
src / bioimageio / core / _op_base.py BlockedOperator.required_measures   0 0 1   100%
src / bioimageio / core / _op_base.py (no function)   9 0 12   100%
src / bioimageio / core / _prediction_pipeline.py PredictionPipeline.__init__   22 2 0   91%
src / bioimageio / core / _prediction_pipeline.py PredictionPipeline.__enter__   2 0 0   100%
src / bioimageio / core / _prediction_pipeline.py PredictionPipeline.__exit__   2 0 0   100%
src / bioimageio / core / _prediction_pipeline.py PredictionPipeline.predict_sample_block   11 2 0   82%
src / bioimageio / core / _prediction_pipeline.py PredictionPipeline.predict_sample_without_blocking   6 0 0   100%
src / bioimageio / core / _prediction_pipeline.py PredictionPipeline.get_output_sample_id   2 2 0   0%
src / bioimageio / core / _prediction_pipeline.py PredictionPipeline.predict_sample_with_fixed_blocking   12 0 0   100%
src / bioimageio / core / _prediction_pipeline.py PredictionPipeline.predict_sample_with_blocking   7 0 0   100%
src / bioimageio / core / _prediction_pipeline.py PredictionPipeline.apply_preprocessing   2 0 0   100%
src / bioimageio / core / _prediction_pipeline.py PredictionPipeline.apply_postprocessing   6 3 0   50%
src / bioimageio / core / _prediction_pipeline.py PredictionPipeline.load   1 0 0   100%
src / bioimageio / core / _prediction_pipeline.py PredictionPipeline.unload   1 0 0   100%
src / bioimageio / core / _prediction_pipeline.py create_prediction_pipeline   11 1 0   91%
src / bioimageio / core / _prediction_pipeline.py create_prediction_pipeline.dataset   5 3 0   40%
src / bioimageio / core / _prediction_pipeline.py (no function)   32 0 1   100%
src / bioimageio / core / _resource_tests.py enable_determinism   39 16 0   59%
src / bioimageio / core / _resource_tests.py test_model   1 0 0   100%
src / bioimageio / core / _resource_tests.py default_run_command   2 0 0   100%
src / bioimageio / core / _resource_tests.py test_description   34 15 1   56%
src / bioimageio / core / _resource_tests.py _test_in_env   75 22 1   71%
src / bioimageio / core / _resource_tests.py load_description_and_test   0 0 1   100%
src / bioimageio / core / _resource_tests.py load_description_and_test   0 0 1   100%
src / bioimageio / core / _resource_tests.py load_description_and_test   0 0 1   100%
src / bioimageio / core / _resource_tests.py load_description_and_test   0 0 1   100%
src / bioimageio / core / _resource_tests.py load_description_and_test   0 0 1   100%
src / bioimageio / core / _resource_tests.py load_description_and_test   0 0 1   100%
src / bioimageio / core / _resource_tests.py load_description_and_test   31 1 0   97%
src / bioimageio / core / _resource_tests.py _get_tolerance   23 7 0   70%
src / bioimageio / core / _resource_tests.py _test_model_inference   74 25 0   66%
src / bioimageio / core / _resource_tests.py _test_model_inference.add_error_entry   1 0 0   100%
src / bioimageio / core / _resource_tests.py _test_model_inference.add_warning_entry   1 1 0   0%
src / bioimageio / core / _resource_tests.py _test_model_inference_parametrized   45 16 0   64%
src / bioimageio / core / _resource_tests.py _test_model_inference_parametrized.generate_test_cases   11 1 0   91%
src / bioimageio / core / _resource_tests.py _test_model_inference_parametrized.generate_test_cases.get_ns   1 0 0   100%
src / bioimageio / core / _resource_tests.py _test_expected_resource_type   2 0 0   100%
src / bioimageio / core / _resource_tests.py (no function)   50 0 84   100%
src / bioimageio / core / _settings.py (no function)   8 0 0   100%
src / bioimageio / core / axis.py _guess_axis_type   11 3 0   73%
src / bioimageio / core / axis.py Axis.__post_init__   4 0 0   100%
src / bioimageio / core / axis.py Axis.create   12 3 0   75%
src / bioimageio / core / axis.py AxisInfo.create   19 12 1   37%
src / bioimageio / core / axis.py (no function)   31 0 0   100%
src / bioimageio / core / backends / __init__.py (no function)   2 0 0   100%
src / bioimageio / core / backends / _model_adapter.py ModelAdapter.__init__   9 0 0   100%
src / bioimageio / core / backends / _model_adapter.py ModelAdapter.create   53 20 1   62%
src / bioimageio / core / backends / _model_adapter.py ModelAdapter.load   1 1 0   0%
src / bioimageio / core / backends / _model_adapter.py ModelAdapter.forward   8 1 0   88%
src / bioimageio / core / backends / _model_adapter.py ModelAdapter._forward_impl   0 0 0   100%
src / bioimageio / core / backends / _model_adapter.py ModelAdapter.unload   0 0 0   100%
src / bioimageio / core / backends / _model_adapter.py ModelAdapter._get_input_args_numpy   0 0 0   100%
src / bioimageio / core / backends / _model_adapter.py (no function)   26 0 0   100%
src / bioimageio / core / backends / keras_backend.py KerasModelAdapter.__init__   23 7 0   70%
src / bioimageio / core / backends / keras_backend.py KerasModelAdapter._forward_impl   4 1 0   75%
src / bioimageio / core / backends / keras_backend.py KerasModelAdapter.unload   1 0 0   100%
src / bioimageio / core / backends / keras_backend.py (no function)   26 3 0   88%
src / bioimageio / core / backends / onnx_backend.py ONNXModelAdapter.__init__   31 13 0   58%
src / bioimageio / core / backends / onnx_backend.py ONNXModelAdapter._forward_impl   5 1 0   80%
src / bioimageio / core / backends / onnx_backend.py ONNXModelAdapter.unload   1 0 0   100%
src / bioimageio / core / backends / onnx_backend.py (no function)   15 0 0   100%
src / bioimageio / core / backends / pytorch_backend.py PytorchModelAdapter.__init__   12 3 1   75%
src / bioimageio / core / backends / pytorch_backend.py PytorchModelAdapter._forward_impl   21 6 1   71%
src / bioimageio / core / backends / pytorch_backend.py PytorchModelAdapter.unload   4 0 0   100%
src / bioimageio / core / backends / pytorch_backend.py load_torch_model   14 4 0   71%
src / bioimageio / core / backends / pytorch_backend.py load_torch_state_dict   17 5 0   71%
src / bioimageio / core / backends / pytorch_backend.py get_devices   7 2 0   71%
src / bioimageio / core / backends / pytorch_backend.py (no function)   25 0 0   100%
src / bioimageio / core / backends / tensorflow_backend.py TensorflowModelAdapter.__init__   8 8 0   0%
src / bioimageio / core / backends / tensorflow_backend.py TensorflowModelAdapter._forward_impl   14 14 0   0%
src / bioimageio / core / backends / tensorflow_backend.py TensorflowModelAdapter.unload   1 1 0   0%
src / bioimageio / core / backends / tensorflow_backend.py KerasModelAdapter.__init__   14 5 0   64%
src / bioimageio / core / backends / tensorflow_backend.py KerasModelAdapter._forward_impl   6 0 0   100%
src / bioimageio / core / backends / tensorflow_backend.py KerasModelAdapter.unload   1 0 0   100%
src / bioimageio / core / backends / tensorflow_backend.py create_tf_model_adapter   14 4 0   71%
src / bioimageio / core / backends / tensorflow_backend.py (no function)   19 0 0   100%
src / bioimageio / core / backends / torchscript_backend.py TorchscriptModelAdapter.__init__   12 3 0   75%
src / bioimageio / core / backends / torchscript_backend.py TorchscriptModelAdapter._forward_impl   7 0 0   100%
src / bioimageio / core / backends / torchscript_backend.py TorchscriptModelAdapter.unload   4 0 0   100%
src / bioimageio / core / backends / torchscript_backend.py (no function)   12 0 0   100%
src / bioimageio / core / block.py Block.inner_data   1 0 0   100%
src / bioimageio / core / block.py Block.__post_init__   6 0 0   100%
src / bioimageio / core / block.py Block.from_sample_member   1 0 0   100%
src / bioimageio / core / block.py Block.get_transformed   1 1 0   0%
src / bioimageio / core / block.py Block.from_meta   1 0 0   100%
src / bioimageio / core / block.py split_tensor_into_blocks   2 2 0   0%
src / bioimageio / core / block.py _block_generator   2 2 0   0%
src / bioimageio / core / block.py (no function)   21 0 0   100%
src / bioimageio / core / block_meta.py LinearAxisTransform.compute   1 0 0   100%
src / bioimageio / core / block_meta.py BlockMeta.shape   1 0 0   100%
src / bioimageio / core / block_meta.py BlockMeta.padding   1 0 0   100%
src / bioimageio / core / block_meta.py BlockMeta.outer_slice   1 0 0   100%
src / bioimageio / core / block_meta.py BlockMeta.inner_shape   1 0 0   100%
src / bioimageio / core / block_meta.py BlockMeta.local_slice   1 0 0   100%
src / bioimageio / core / block_meta.py BlockMeta.dims   1 1 0   0%
src / bioimageio / core / block_meta.py BlockMeta.tagged_shape   1 1 0   0%
src / bioimageio / core / block_meta.py BlockMeta.inner_slice_wo_overlap   1 1 0   0%
src / bioimageio / core / block_meta.py BlockMeta.__post_init__   10 1 0   90%
src / bioimageio / core / block_meta.py BlockMeta.get_transformed   1 1 0   0%
src / bioimageio / core / block_meta.py split_shape_into_blocks   15 1 0   93%
src / bioimageio / core / block_meta.py _block_meta_generator   5 0 0   100%
src / bioimageio / core / block_meta.py split_multiple_shapes_into_blocks   27 8 0   70%
src / bioimageio / core / block_meta.py _aligned_blocks_generator   3 0 0   100%
src / bioimageio / core / block_meta.py _repeat_single_block   6 6 0   0%
src / bioimageio / core / block_meta.py (no function)   50 0 0   100%
src / bioimageio / core / cli.py WithSummaryLogging.log   1 0 0   100%
src / bioimageio / core / cli.py WithSource.descr   1 0 0   100%
src / bioimageio / core / cli.py WithSource.descr_id   6 1 0   83%
src / bioimageio / core / cli.py ValidateFormatCmd.descr   1 1 0   0%
src / bioimageio / core / cli.py ValidateFormatCmd.cli_cmd   2 2 0   0%
src / bioimageio / core / cli.py TestCmd.cli_cmd   1 0 0   100%
src / bioimageio / core / cli.py PackageCmd.cli_cmd   4 2 0   50%
src / bioimageio / core / cli.py _get_stat   17 14 0   18%
src / bioimageio / core / cli.py UpdateCmdBase.updated   1 1 0   0%
src / bioimageio / core / cli.py UpdateCmdBase.cli_cmd   23 5 1   78%
src / bioimageio / core / cli.py UpdateFormatCmd.updated   1 0 0   100%
src / bioimageio / core / cli.py UpdateHashesCmd.updated   1 0 0   100%
src / bioimageio / core / cli.py PredictCmd._example   39 6 0   85%
src / bioimageio / core / cli.py PredictCmd._example.get_example_command   2 0 0   100%
src / bioimageio / core / cli.py PredictCmd.cli_cmd   32 1 0   97%
src / bioimageio / core / cli.py PredictCmd.cli_cmd.expand_inputs   13 6 0   54%
src / bioimageio / core / cli.py PredictCmd.cli_cmd.expand_outputs   12 4 0   67%
src / bioimageio / core / cli.py PredictCmd.cli_cmd.input_dataset   2 0 0   100%
src / bioimageio / core / cli.py AddWeightsCmd.cli_cmd   5 1 0   80%
src / bioimageio / core / cli.py Bioimageio.settings_customise_sources   4 0 0   100%
src / bioimageio / core / cli.py Bioimageio._log   2 0 0   100%
src / bioimageio / core / cli.py Bioimageio.cli_cmd   2 0 0   100%
src / bioimageio / core / cli.py _get_sample_ids   10 2 0   80%
src / bioimageio / core / cli.py _get_sample_ids.get_common_seq   13 7 0   46%
src / bioimageio / core / cli.py _get_sample_ids.get_shorter_diff   14 6 0   57%
src / bioimageio / core / cli.py (no function)   163 0 0   100%
src / bioimageio / core / commands.py test   5 1 0   80%
src / bioimageio / core / commands.py validate_format   2 0 0   100%
src / bioimageio / core / commands.py package   13 6 0   54%
src / bioimageio / core / commands.py (no function)   11 0 0   100%
src / bioimageio / core / common.py _LeftRight.create   6 0 1   100%
src / bioimageio / core / common.py (no function)   48 0 0   100%
src / bioimageio / core / dataset.py (no function)   3 3 0   0%
src / bioimageio / core / digest_spec.py import_callable   13 5 1   62%
src / bioimageio / core / digest_spec.py _import_from_file_impl   42 13 0   69%
src / bioimageio / core / digest_spec.py get_axes_infos   7 0 0   100%
src / bioimageio / core / digest_spec.py get_member_id   4 0 1   100%
src / bioimageio / core / digest_spec.py get_member_ids   1 0 0   100%
src / bioimageio / core / digest_spec.py get_test_input_sample   1 0 0   100%
src / bioimageio / core / digest_spec.py get_test_output_sample   1 0 0   100%
src / bioimageio / core / digest_spec.py _get_test_sample   10 1 0   90%
src / bioimageio / core / digest_spec.py get_input_halo   17 1 0   94%
src / bioimageio / core / digest_spec.py get_block_transform   27 2 1   93%
src / bioimageio / core / digest_spec.py get_io_sample_block_metas   9 1 0   89%
src / bioimageio / core / digest_spec.py get_tensor   7 2 0   71%
src / bioimageio / core / digest_spec.py create_sample_for_model   11 5 0   55%
src / bioimageio / core / digest_spec.py load_sample_for_model   16 2 0   88%
src / bioimageio / core / digest_spec.py (no function)   51 0 0   100%
src / bioimageio / core / io.py load_image   13 3 0   77%
src / bioimageio / core / io.py load_tensor   2 0 0   100%
src / bioimageio / core / io.py save_tensor   17 2 0   88%
src / bioimageio / core / io.py save_sample   8 1 0   88%
src / bioimageio / core / io.py save_dataset_stat   2 2 0   0%
src / bioimageio / core / io.py load_dataset_stat   2 2 0   0%
src / bioimageio / core / io.py ensure_unzipped   13 4 0   69%
src / bioimageio / core / io.py get_suffix   1 1 0   0%
src / bioimageio / core / io.py (no function)   33 0 0   100%
src / bioimageio / core / model_adapters.py get_weight_formats   1 1 0   0%
src / bioimageio / core / model_adapters.py (no function)   4 0 0   100%
src / bioimageio / core / prediction.py predict   25 6 0   76%
src / bioimageio / core / prediction.py predict_many   16 16 0   0%
src / bioimageio / core / prediction.py (no function)   16 0 0   100%
src / bioimageio / core / proc_ops.py _convert_axis_ids   8 3 1   62%
src / bioimageio / core / proc_ops.py _SimpleOperator.required_measures   1 0 0   100%
src / bioimageio / core / proc_ops.py _SimpleOperator.get_output_shape   0 0 1   100%
src / bioimageio / core / proc_ops.py _SimpleOperator.__call__   11 4 1   64%
src / bioimageio / core / proc_ops.py _SimpleOperator._apply   0 0 1   100%
src / bioimageio / core / proc_ops.py AddKnownDatasetStats.required_measures   1 1 0   0%
src / bioimageio / core / proc_ops.py AddKnownDatasetStats.__call__   1 1 0   0%
src / bioimageio / core / proc_ops.py UpdateStats.required_measures   1 1 0   0%
src / bioimageio / core / proc_ops.py UpdateStats.__post_init__   1 0 0   100%
src / bioimageio / core / proc_ops.py UpdateStats.__call__   8 4 0   50%
src / bioimageio / core / proc_ops.py Binarize._apply   1 0 0   100%
src / bioimageio / core / proc_ops.py Binarize.get_output_shape   1 1 0   0%
src / bioimageio / core / proc_ops.py Binarize.from_proc_descr   4 4 1   0%
src / bioimageio / core / proc_ops.py Clip.__post_init__   9 4 0   56%
src / bioimageio / core / proc_ops.py Clip.required_measures   1 0 0   100%
src / bioimageio / core / proc_ops.py Clip._apply   17 2 0   88%
src / bioimageio / core / proc_ops.py Clip.get_output_shape   1 1 0   0%
src / bioimageio / core / proc_ops.py Clip.from_proc_descr   19 8 1   58%
src / bioimageio / core / proc_ops.py EnsureDtype.from_proc_descr   1 0 0   100%
src / bioimageio / core / proc_ops.py EnsureDtype.get_descr   1 1 0   0%
src / bioimageio / core / proc_ops.py EnsureDtype.get_output_shape   1 1 0   0%
src / bioimageio / core / proc_ops.py EnsureDtype._apply   1 0 0   100%
src / bioimageio / core / proc_ops.py ScaleLinear._apply   1 0 0   100%
src / bioimageio / core / proc_ops.py ScaleLinear.get_output_shape   1 1 0   0%
src / bioimageio / core / proc_ops.py ScaleLinear.from_proc_descr   17 9 1   47%
src / bioimageio / core / proc_ops.py ScaleMeanVariance.required_measures   1 0 0   100%
src / bioimageio / core / proc_ops.py ScaleMeanVariance.__post_init__   11 2 0   82%
src / bioimageio / core / proc_ops.py ScaleMeanVariance._apply   5 0 0   100%
src / bioimageio / core / proc_ops.py ScaleMeanVariance.get_output_shape   1 1 0   0%
src / bioimageio / core / proc_ops.py ScaleMeanVariance.from_proc_descr   3 3 0   0%
src / bioimageio / core / proc_ops.py _get_axes   8 1 1   88%
src / bioimageio / core / proc_ops.py ScaleRange.__post_init__   10 0 0   100%
src / bioimageio / core / proc_ops.py ScaleRange.required_measures   1 0 0   100%
src / bioimageio / core / proc_ops.py ScaleRange.get_output_shape   1 1 0   0%
src / bioimageio / core / proc_ops.py ScaleRange.from_proc_descr   7 1 0   86%
src / bioimageio / core / proc_ops.py ScaleRange._apply   3 0 0   100%
src / bioimageio / core / proc_ops.py ScaleRange.get_descr   3 3 0   0%
src / bioimageio / core / proc_ops.py Sigmoid._apply   1 0 0   100%
src / bioimageio / core / proc_ops.py Sigmoid.required_measures   1 0 0   100%
src / bioimageio / core / proc_ops.py Sigmoid.get_output_shape   1 1 0   0%
src / bioimageio / core / proc_ops.py Sigmoid.from_proc_descr   2 0 0   100%
src / bioimageio / core / proc_ops.py Sigmoid.get_descr   1 1 0   0%
src / bioimageio / core / proc_ops.py Softmax._apply   4 0 0   100%
src / bioimageio / core / proc_ops.py Softmax.required_measures   1 1 0   0%
src / bioimageio / core / proc_ops.py Softmax.get_output_shape   1 1 0   0%
src / bioimageio / core / proc_ops.py Softmax.from_proc_descr   2 2 0   0%
src / bioimageio / core / proc_ops.py Softmax.get_descr   1 1 0   0%
src / bioimageio / core / proc_ops.py ZeroMeanUnitVariance.__post_init__   1 0 0   100%
src / bioimageio / core / proc_ops.py ZeroMeanUnitVariance.required_measures   1 0 0   100%
src / bioimageio / core / proc_ops.py ZeroMeanUnitVariance.get_output_shape   1 1 0   0%
src / bioimageio / core / proc_ops.py ZeroMeanUnitVariance.from_proc_descr   7 2 0   71%
src / bioimageio / core / proc_ops.py ZeroMeanUnitVariance._apply   3 0 0   100%
src / bioimageio / core / proc_ops.py ZeroMeanUnitVariance.get_descr   1 1 0   0%
src / bioimageio / core / proc_ops.py FixedZeroMeanUnitVariance.__post_init__   1 0 0   100%
src / bioimageio / core / proc_ops.py FixedZeroMeanUnitVariance.get_output_shape   1 1 0   0%
src / bioimageio / core / proc_ops.py FixedZeroMeanUnitVariance.from_proc_descr   5 5 1   0%
src / bioimageio / core / proc_ops.py FixedZeroMeanUnitVariance.get_descr   7 7 0   0%
src / bioimageio / core / proc_ops.py FixedZeroMeanUnitVariance._apply   1 0 0   100%
src / bioimageio / core / proc_ops.py get_proc   27 11 1   59%
src / bioimageio / core / proc_ops.py (no function)   162 0 5   100%
src / bioimageio / core / proc_setup.py _ApplyProcs.__init__   2 0 0   100%
src / bioimageio / core / proc_setup.py _ApplyProcs.__call__   2 0 0   100%
src / bioimageio / core / proc_setup.py get_pre_and_postprocessing   2 0 0   100%
src / bioimageio / core / proc_setup.py setup_pre_and_postprocessing   15 3 0   80%
src / bioimageio / core / proc_setup.py get_requried_measures   2 2 0   0%
src / bioimageio / core / proc_setup.py get_required_dataset_measures   2 0 0   100%
src / bioimageio / core / proc_setup.py get_requried_sample_measures   2 2 0   0%
src / bioimageio / core / proc_setup.py _prepare_procs   18 0 1   100%
src / bioimageio / core / proc_setup.py _prepare_setup_pre_and_postprocessing   7 0 1   100%
src / bioimageio / core / proc_setup.py (no function)   39 0 0   100%
src / bioimageio / core / sample.py Sample.shape   1 0 0   100%
src / bioimageio / core / sample.py Sample.as_arrays   1 1 0   0%
src / bioimageio / core / sample.py Sample.split_into_blocks   4 0 0   100%
src / bioimageio / core / sample.py Sample.as_single_block   3 3 0   0%
src / bioimageio / core / sample.py Sample.from_blocks   14 1 0   93%
src / bioimageio / core / sample.py SampleBlockBase.shape   1 1 0   0%
src / bioimageio / core / sample.py SampleBlockBase.inner_shape   1 1 0   0%
src / bioimageio / core / sample.py SampleBlockMeta.get_transformed   9 1 0   89%
src / bioimageio / core / sample.py SampleBlockMeta.get_transformed.get_member_halo   1 0 0   100%
src / bioimageio / core / sample.py SampleBlockMeta.with_data   1 0 0   100%
src / bioimageio / core / sample.py SampleBlock.members   1 0 0   100%
src / bioimageio / core / sample.py SampleBlock.get_transformed_meta   1 0 0   100%
src / bioimageio / core / sample.py _ConsolidatedMemberBlocks.__init__   7 0 0   100%
src / bioimageio / core / sample.py sample_block_meta_generator   3 0 0   100%
src / bioimageio / core / sample.py sample_block_generator   3 0 0   100%
src / bioimageio / core / sample.py (no function)   67 0 0   100%
src / bioimageio / core / stat_calculators.py MeanCalculator.__init__   7 7 0   0%
src / bioimageio / core / stat_calculators.py MeanCalculator.compute   1 1 0   0%
src / bioimageio / core / stat_calculators.py MeanCalculator._compute_impl   2 2 0   0%
src / bioimageio / core / stat_calculators.py MeanCalculator.update   2 2 0   0%
src / bioimageio / core / stat_calculators.py MeanCalculator.compute_and_update   3 3 0   0%
src / bioimageio / core / stat_calculators.py MeanCalculator._update_impl   12 12 0   0%
src / bioimageio / core / stat_calculators.py MeanCalculator.finalize   3 3 0   0%
src / bioimageio / core / stat_calculators.py MeanVarStdCalculator.__init__   6 0 0   100%
src / bioimageio / core / stat_calculators.py MeanVarStdCalculator.compute   13 1 0   92%
src / bioimageio / core / stat_calculators.py MeanVarStdCalculator.update   22 1 0   95%
src / bioimageio / core / stat_calculators.py MeanVarStdCalculator.finalize   9 2 0   78%
src / bioimageio / core / stat_calculators.py SampleQuantilesCalculator.__init__   6 0 0   100%
src / bioimageio / core / stat_calculators.py SampleQuantilesCalculator.compute   3 0 0   100%
src / bioimageio / core / stat_calculators.py MeanQuantilesCalculator.__init__   7 0 0   100%
src / bioimageio / core / stat_calculators.py MeanQuantilesCalculator.update   9 2 0   78%
src / bioimageio / core / stat_calculators.py MeanQuantilesCalculator.finalize   4 1 0   75%
src / bioimageio / core / stat_calculators.py CrickQuantilesCalculator.__init__   11 0 0   100%
src / bioimageio / core / stat_calculators.py CrickQuantilesCalculator._initialize   11 3 0   73%
src / bioimageio / core / stat_calculators.py CrickQuantilesCalculator.update   9 0 0   100%
src / bioimageio / core / stat_calculators.py CrickQuantilesCalculator.finalize   6 1 0   83%
src / bioimageio / core / stat_calculators.py NaiveSampleMeasureCalculator.__init__   3 3 0   0%
src / bioimageio / core / stat_calculators.py NaiveSampleMeasureCalculator.compute   1 1 0   0%
src / bioimageio / core / stat_calculators.py StatsCalculator.__init__   10 5 0   50%
src / bioimageio / core / stat_calculators.py StatsCalculator.has_dataset_measures   1 0 0   100%
src / bioimageio / core / stat_calculators.py StatsCalculator.update   1 0 0   100%
src / bioimageio / core / stat_calculators.py StatsCalculator.finalize   6 2 0   67%
src / bioimageio / core / stat_calculators.py StatsCalculator.update_and_get_all   4 1 0   75%
src / bioimageio / core / stat_calculators.py StatsCalculator.skip_update_and_get_all   1 1 0   0%
src / bioimageio / core / stat_calculators.py StatsCalculator._compute   5 0 0   100%
src / bioimageio / core / stat_calculators.py StatsCalculator._update   9 1 0   89%
src / bioimageio / core / stat_calculators.py get_measure_calculators   40 8 1   80%
src / bioimageio / core / stat_calculators.py compute_dataset_measures   9 9 0   0%
src / bioimageio / core / stat_calculators.py compute_sample_measures   6 6 0   0%
src / bioimageio / core / stat_calculators.py compute_measures   13 1 0   92%
src / bioimageio / core / stat_calculators.py (no function)   73 2 0   97%
src / bioimageio / core / stat_measures.py tensor_custom_before_validator   3 3 0   0%
src / bioimageio / core / stat_measures.py tensor_custom_serializer   1 1 0   0%
src / bioimageio / core / stat_measures.py SampleLike.members   0 0 1   100%
src / bioimageio / core / stat_measures.py SampleMeasureBase.compute   0 0 1   100%
src / bioimageio / core / stat_measures.py SampleMean.compute   2 0 0   100%
src / bioimageio / core / stat_measures.py SampleMean.model_post_init   1 0 0   100%
src / bioimageio / core / stat_measures.py DatasetMean.model_post_init   1 0 0   100%
src / bioimageio / core / stat_measures.py SampleStd.compute   2 0 0   100%
src / bioimageio / core / stat_measures.py SampleStd.model_post_init   1 0 0   100%
src / bioimageio / core / stat_measures.py DatasetStd.model_post_init   1 0 0   100%
src / bioimageio / core / stat_measures.py SampleVar.compute   2 0 0   100%
src / bioimageio / core / stat_measures.py SampleVar.model_post_init   1 0 0   100%
src / bioimageio / core / stat_measures.py DatasetVar.model_post_init   1 0 0   100%
src / bioimageio / core / stat_measures.py _Quantile.model_post_init   2 0 0   100%
src / bioimageio / core / stat_measures.py SampleQuantile.compute   2 0 0   100%
src / bioimageio / core / stat_measures.py SampleQuantile.model_post_init   2 0 0   100%
src / bioimageio / core / stat_measures.py DatasetQuantile.model_post_init   2 0 0   100%
src / bioimageio / core / stat_measures.py (no function)   73 0 5   100%
src / bioimageio / core / tensor.py Tensor.__init__   3 0 0   100%
src / bioimageio / core / tensor.py Tensor.__array__   1 0 0   100%
src / bioimageio / core / tensor.py Tensor.__getitem__   7 2 0   71%
src / bioimageio / core / tensor.py Tensor.__setitem__   8 2 0   75%
src / bioimageio / core / tensor.py Tensor.__len__   1 0 0   100%
src / bioimageio / core / tensor.py Tensor._iter   2 0 0   100%
src / bioimageio / core / tensor.py Tensor.__iter__   3 1 0   67%
src / bioimageio / core / tensor.py Tensor._binary_op   2 0 0   100%
src / bioimageio / core / tensor.py Tensor._inplace_binary_op   2 2 0   0%
src / bioimageio / core / tensor.py Tensor._unary_op   2 0 0   100%
src / bioimageio / core / tensor.py Tensor.from_xarray   1 0 0   100%
src / bioimageio / core / tensor.py Tensor.from_numpy   11 2 0   82%
src / bioimageio / core / tensor.py Tensor.data   1 0 0   100%
src / bioimageio / core / tensor.py Tensor.dims   1 0 0   100%
src / bioimageio / core / tensor.py Tensor.dtype   3 0 0   100%
src / bioimageio / core / tensor.py Tensor.ndim   1 0 0   100%
src / bioimageio / core / tensor.py Tensor.shape   1 0 0   100%
src / bioimageio / core / tensor.py Tensor.shape_tuple   1 0 0   100%
src / bioimageio / core / tensor.py Tensor.size   1 0 0   100%
src / bioimageio / core / tensor.py Tensor.sizes   1 0 0   100%
src / bioimageio / core / tensor.py Tensor.tagged_shape   1 0 0   100%
src / bioimageio / core / tensor.py Tensor.argmax   3 3 0   0%
src / bioimageio / core / tensor.py Tensor.astype   1 0 0   100%
src / bioimageio / core / tensor.py Tensor.clip   1 0 0   100%
src / bioimageio / core / tensor.py Tensor.crop_to   19 5 1   74%
src / bioimageio / core / tensor.py Tensor.expand_dims   1 1 0   0%
src / bioimageio / core / tensor.py Tensor.item   5 5 0   0%
src / bioimageio / core / tensor.py Tensor.mean   1 0 0   100%
src / bioimageio / core / tensor.py Tensor.pad   2 0 0   100%
src / bioimageio / core / tensor.py Tensor.pad_to   21 6 1   71%
src / bioimageio / core / tensor.py Tensor.quantile   4 0 0   100%
src / bioimageio / core / tensor.py Tensor.resize_to   19 1 0   95%
src / bioimageio / core / tensor.py Tensor.std   1 0 0   100%
src / bioimageio / core / tensor.py Tensor.sum   1 0 0   100%
src / bioimageio / core / tensor.py Tensor.transpose   5 0 0   100%
src / bioimageio / core / tensor.py Tensor.var   1 0 0   100%
src / bioimageio / core / tensor.py Tensor._interprete_array_wo_known_axes   13 3 0   77%
src / bioimageio / core / tensor.py _add_singletons   12 5 0   58%
src / bioimageio / core / tensor.py _get_array_view   12 3 0   75%
src / bioimageio / core / tensor.py (no function)   67 0 2   100%
src / bioimageio / core / utils / __init__.py (no function)   1 0 0   100%
src / bioimageio / core / utils / _compare.py compare   5 1 1   80%
src / bioimageio / core / utils / _compare.py (no function)   4 0 0   100%
src / bioimageio / core / utils / _type_guards.py (no function)   4 0 0   100%
src / bioimageio / core / weight_converters / __init__.py (no function)   2 0 0   100%
src / bioimageio / core / weight_converters / _add_weights.py add_weights   72 27 0   62%
src / bioimageio / core / weight_converters / _add_weights.py (no function)   8 0 0   100%
src / bioimageio / core / weight_converters / _utils_torch_onnx.py get_torch_sample_inputs   5 0 0   100%
src / bioimageio / core / weight_converters / _utils_torch_onnx.py _get_dynamic_axes_noop   1 0 0   100%
src / bioimageio / core / weight_converters / _utils_torch_onnx.py _get_dynamic_axes_impl   6 6 0   0%
src / bioimageio / core / weight_converters / _utils_torch_onnx.py export_to_onnx   14 2 0   86%
src / bioimageio / core / weight_converters / _utils_torch_onnx.py (no function)   62 18 3   71%
src / bioimageio / core / weight_converters / keras_to_tensorflow.py convert   23 23 0   0%
src / bioimageio / core / weight_converters / keras_to_tensorflow.py _convert_tf2   5 5 0   0%
src / bioimageio / core / weight_converters / keras_to_tensorflow.py _convert_tf1   5 5 0   0%
src / bioimageio / core / weight_converters / keras_to_tensorflow.py _convert_tf1.build_tf_model   6 6 0   0%
src / bioimageio / core / weight_converters / keras_to_tensorflow.py _zip_model_bundle   11 11 0   0%
src / bioimageio / core / weight_converters / keras_to_tensorflow.py (no function)   22 22 0   0%
src / bioimageio / core / weight_converters / pytorch_to_onnx.py convert   5 1 0   80%
src / bioimageio / core / weight_converters / pytorch_to_onnx.py (no function)   5 0 0   100%
src / bioimageio / core / weight_converters / pytorch_to_torchscript.py convert   11 1 0   91%
src / bioimageio / core / weight_converters / pytorch_to_torchscript.py (no function)   9 0 0   100%
src / bioimageio / core / weight_converters / torchscript_to_onnx.py convert   10 1 0   90%
src / bioimageio / core / weight_converters / torchscript_to_onnx.py (no function)   6 0 0   100%
Total     3815 806 151   79%

No items found using the specified filter.