Coverage report: 79%

Files Functions Classes

coverage.py v7.13.4, created at 2026-02-13 09:46 +0000

File class   statements missing excluded   coverage
src / bioimageio / core / __init__.py (no class)   58 0 0   100%
src / bioimageio / core / __main__.py (no class)   11 1 0   91%
src / bioimageio / core / _magic_tensor_ops.py MagicTensorOpsMixin   51 41 0   20%
src / bioimageio / core / _magic_tensor_ops.py (no class)   107 0 0   100%
src / bioimageio / core / _op_base.py Operator   0 0 2   100%
src / bioimageio / core / _op_base.py BlockedOperator   0 0 2   100%
src / bioimageio / core / _op_base.py (no class)   9 0 12   100%
src / bioimageio / core / _prediction_pipeline.py PredictionPipeline   74 9 0   88%
src / bioimageio / core / _prediction_pipeline.py (no class)   48 4 1   92%
src / bioimageio / core / _resource_tests.py DeprecatedKwargs   0 0 0   100%
src / bioimageio / core / _resource_tests.py (no class)   390 104 92   73%
src / bioimageio / core / _settings.py Settings   0 0 0   100%
src / bioimageio / core / _settings.py (no class)   8 0 0   100%
src / bioimageio / core / axis.py AxisDescrLike   0 0 0   100%
src / bioimageio / core / axis.py Axis   16 3 0   81%
src / bioimageio / core / axis.py AxisInfo   19 12 1   37%
src / bioimageio / core / axis.py (no class)   42 3 0   93%
src / bioimageio / core / backends / __init__.py (no class)   2 0 0   100%
src / bioimageio / core / backends / _model_adapter.py ModelAdapter   71 22 1   69%
src / bioimageio / core / backends / _model_adapter.py (no class)   26 0 0   100%
src / bioimageio / core / backends / keras_backend.py KerasModelAdapter   28 8 0   71%
src / bioimageio / core / backends / keras_backend.py (no class)   26 3 0   88%
src / bioimageio / core / backends / onnx_backend.py ONNXModelAdapter   37 14 0   62%
src / bioimageio / core / backends / onnx_backend.py (no class)   15 0 0   100%
src / bioimageio / core / backends / pytorch_backend.py PytorchModelAdapter   37 9 2   76%
src / bioimageio / core / backends / pytorch_backend.py (no class)   63 11 0   83%
src / bioimageio / core / backends / tensorflow_backend.py TensorflowModelAdapter   23 23 0   0%
src / bioimageio / core / backends / tensorflow_backend.py KerasModelAdapter   21 5 0   76%
src / bioimageio / core / backends / tensorflow_backend.py (no class)   33 4 0   88%
src / bioimageio / core / backends / torchscript_backend.py TorchscriptModelAdapter   23 3 0   87%
src / bioimageio / core / backends / torchscript_backend.py (no class)   12 0 0   100%
src / bioimageio / core / block.py Block   10 1 0   90%
src / bioimageio / core / block.py (no class)   25 4 0   84%
src / bioimageio / core / block_meta.py LinearAxisTransform   1 0 0   100%
src / bioimageio / core / block_meta.py BlockMeta   19 5 0   74%
src / bioimageio / core / block_meta.py (no class)   106 15 0   86%
src / bioimageio / core / cli.py CmdBase   0 0 0   100%
src / bioimageio / core / cli.py ArgMixin   0 0 0   100%
src / bioimageio / core / cli.py WithSummaryLogging   1 0 0   100%
src / bioimageio / core / cli.py WithSource   7 1 0   86%
src / bioimageio / core / cli.py ValidateFormatCmd   3 3 0   0%
src / bioimageio / core / cli.py TestCmd   1 0 0   100%
src / bioimageio / core / cli.py PackageCmd   4 2 0   50%
src / bioimageio / core / cli.py UpdateCmdBase   24 6 1   75%
src / bioimageio / core / cli.py UpdateFormatCmd   1 0 0   100%
src / bioimageio / core / cli.py UpdateHashesCmd   1 0 0   100%
src / bioimageio / core / cli.py PredictCmd   100 17 0   83%
src / bioimageio / core / cli.py AddWeightsCmd   5 1 0   80%
src / bioimageio / core / cli.py Bioimageio   8 0 0   100%
src / bioimageio / core / cli.py (no class)   217 29 0   87%
src / bioimageio / core / commands.py (no class)   31 7 0   77%
src / bioimageio / core / common.py _LeftRight   6 0 1   100%
src / bioimageio / core / common.py CropWidth   0 0 0   100%
src / bioimageio / core / common.py Halo   0 0 0   100%
src / bioimageio / core / common.py OverlapWidth   0 0 0   100%
src / bioimageio / core / common.py PadWidth   0 0 0   100%
src / bioimageio / core / common.py SliceInfo   0 0 0   100%
src / bioimageio / core / common.py (no class)   48 0 0   100%
src / bioimageio / core / dataset.py (no class)   3 3 0   0%
src / bioimageio / core / digest_spec.py IO_SampleBlockMeta   0 0 0   100%
src / bioimageio / core / digest_spec.py (no class)   217 32 3   85%
src / bioimageio / core / io.py _SerializedDatasetStatsEntry   0 0 0   100%
src / bioimageio / core / io.py (no class)   91 15 0   84%
src / bioimageio / core / model_adapters.py (no class)   5 1 0   80%
src / bioimageio / core / prediction.py (no class)   57 22 0   61%
src / bioimageio / core / proc_ops.py _SimpleOperator   12 4 3   67%
src / bioimageio / core / proc_ops.py AddKnownDatasetStats   2 2 0   0%
src / bioimageio / core / proc_ops.py UpdateStats   10 5 0   50%
src / bioimageio / core / proc_ops.py Binarize   6 5 1   17%
src / bioimageio / core / proc_ops.py Clip   47 15 1   68%
src / bioimageio / core / proc_ops.py EnsureDtype   4 2 0   50%
src / bioimageio / core / proc_ops.py ScaleLinear   19 10 1   47%
src / bioimageio / core / proc_ops.py ScaleMeanVariance   21 6 0   71%
src / bioimageio / core / proc_ops.py ScaleRange   25 5 0   80%
src / bioimageio / core / proc_ops.py Sigmoid   6 2 0   67%
src / bioimageio / core / proc_ops.py Softmax   9 5 0   44%
src / bioimageio / core / proc_ops.py ZeroMeanUnitVariance   14 4 0   71%
src / bioimageio / core / proc_ops.py FixedZeroMeanUnitVariance   15 13 1   13%
src / bioimageio / core / proc_ops.py (no class)   205 15 8   93%
src / bioimageio / core / proc_setup.py PreAndPostprocessing   0 0 0   100%
src / bioimageio / core / proc_setup.py _ProcessingCallables   0 0 0   100%
src / bioimageio / core / proc_setup.py _SetupProcessing   0 0 0   100%
src / bioimageio / core / proc_setup.py _ApplyProcs   4 0 0   100%
src / bioimageio / core / proc_setup.py RequiredMeasures   0 0 0   100%
src / bioimageio / core / proc_setup.py RequiredDatasetMeasures   0 0 0   100%
src / bioimageio / core / proc_setup.py RequiredSampleMeasures   0 0 0   100%
src / bioimageio / core / proc_setup.py (no class)   87 7 2   92%
src / bioimageio / core / sample.py Sample   23 5 0   78%
src / bioimageio / core / sample.py SampleBlockBase   2 2 0   0%
src / bioimageio / core / sample.py LinearSampleAxisTransform   0 0 0   100%
src / bioimageio / core / sample.py SampleBlockMeta   11 1 0   91%
src / bioimageio / core / sample.py SampleBlock   2 0 0   100%
src / bioimageio / core / sample.py SampleBlockWithOrigin   0 0 0   100%
src / bioimageio / core / sample.py _ConsolidatedMemberBlocks   7 0 0   100%
src / bioimageio / core / sample.py (no class)   73 0 0   100%
src / bioimageio / core / stat_calculators.py MeanCalculator   30 30 0   0%
src / bioimageio / core / stat_calculators.py MeanVarStdCalculator   50 4 0   92%
src / bioimageio / core / stat_calculators.py SampleQuantilesCalculator   9 0 0   100%
src / bioimageio / core / stat_calculators.py MeanQuantilesCalculator   20 3 0   85%
src / bioimageio / core / stat_calculators.py CrickQuantilesCalculator   37 4 0   89%
src / bioimageio / core / stat_calculators.py NaiveSampleMeasureCalculator   4 4 0   0%
src / bioimageio / core / stat_calculators.py StatsCalculator   37 10 0   73%
src / bioimageio / core / stat_calculators.py (no class)   141 26 1   82%
src / bioimageio / core / stat_measures.py SampleLike   0 0 1   100%
src / bioimageio / core / stat_measures.py MeasureBase   0 0 0   100%
src / bioimageio / core / stat_measures.py SampleMeasureBase   0 0 1   100%
src / bioimageio / core / stat_measures.py DatasetMeasureBase   0 0 0   100%
src / bioimageio / core / stat_measures.py _Mean   0 0 0   100%
src / bioimageio / core / stat_measures.py SampleMean   3 0 0   100%
src / bioimageio / core / stat_measures.py DatasetMean   1 0 0   100%
src / bioimageio / core / stat_measures.py _Std   0 0 0   100%
src / bioimageio / core / stat_measures.py SampleStd   3 0 0   100%
src / bioimageio / core / stat_measures.py DatasetStd   1 0 0   100%
src / bioimageio / core / stat_measures.py _Var   0 0 0   100%
src / bioimageio / core / stat_measures.py SampleVar   3 0 0   100%
src / bioimageio / core / stat_measures.py DatasetVar   1 0 0   100%
src / bioimageio / core / stat_measures.py _Quantile   2 0 0   100%
src / bioimageio / core / stat_measures.py SampleQuantile   4 0 0   100%
src / bioimageio / core / stat_measures.py DatasetQuantile   2 0 0   100%
src / bioimageio / core / stat_measures.py (no class)   77 4 5   95%
src / bioimageio / core / tensor.py Tensor   152 33 2   78%
src / bioimageio / core / tensor.py (no class)   91 8 2   91%
src / bioimageio / core / utils / __init__.py (no class)   1 0 0   100%
src / bioimageio / core / utils / _compare.py (no class)   9 1 1   89%
src / bioimageio / core / utils / _type_guards.py (no class)   4 0 0   100%
src / bioimageio / core / weight_converters / __init__.py (no class)   2 0 0   100%
src / bioimageio / core / weight_converters / _add_weights.py (no class)   80 27 0   66%
src / bioimageio / core / weight_converters / _utils_torch_onnx.py (no class)   88 26 3   70%
src / bioimageio / core / weight_converters / keras_to_tensorflow.py (no class)   72 72 0   0%
src / bioimageio / core / weight_converters / pytorch_to_onnx.py (no class)   10 1 0   90%
src / bioimageio / core / weight_converters / pytorch_to_torchscript.py (no class)   20 1 0   95%
src / bioimageio / core / weight_converters / torchscript_to_onnx.py (no class)   16 1 0   94%
Total     3815 806 151   79%

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