Coverage report: 78%

Files Functions Classes

coverage.py v7.13.5, created at 2026-03-30 13:23 +0000

File class   statements missing excluded   coverage
src / bioimageio / core / __init__.py (no class)   58 0 0   100%
src / bioimageio / core / __main__.py (no class)   11 1 0   91%
src / bioimageio / core / _magic_tensor_ops.py MagicTensorOpsMixin   51 41 0   20%
src / bioimageio / core / _magic_tensor_ops.py (no class)   107 0 0   100%
src / bioimageio / core / _op_base.py Operator   0 0 2   100%
src / bioimageio / core / _op_base.py SamplewiseOperator   0 0 0   100%
src / bioimageio / core / _op_base.py BlockwiseOperator   0 0 0   100%
src / bioimageio / core / _op_base.py SimpleOperator   11 4 3   64%
src / bioimageio / core / _op_base.py (no class)   22 0 9   100%
src / bioimageio / core / _prediction_pipeline.py PredictionPipeline   92 22 0   76%
src / bioimageio / core / _prediction_pipeline.py (no class)   54 4 0   93%
src / bioimageio / core / _resource_tests.py DeprecatedKwargs   0 0 0   100%
src / bioimageio / core / _resource_tests.py (no class)   418 112 98   73%
src / bioimageio / core / _settings.py Settings   0 0 0   100%
src / bioimageio / core / _settings.py (no class)   8 0 0   100%
src / bioimageio / core / axis.py AxisDescrLike   0 0 0   100%
src / bioimageio / core / axis.py Axis   16 3 0   81%
src / bioimageio / core / axis.py AxisInfo   19 12 1   37%
src / bioimageio / core / axis.py (no class)   42 3 0   93%
src / bioimageio / core / backends / __init__.py (no class)   2 0 0   100%
src / bioimageio / core / backends / _model_adapter.py ModelAdapter   79 30 1   62%
src / bioimageio / core / backends / _model_adapter.py (no class)   26 0 0   100%
src / bioimageio / core / backends / keras_backend.py KerasModelAdapter   38 17 0   55%
src / bioimageio / core / backends / keras_backend.py (no class)   27 3 0   89%
src / bioimageio / core / backends / onnx_backend.py ONNXModelAdapter   39 15 0   62%
src / bioimageio / core / backends / onnx_backend.py (no class)   15 0 0   100%
src / bioimageio / core / backends / pytorch_backend.py PytorchModelAdapter   37 9 2   76%
src / bioimageio / core / backends / pytorch_backend.py (no class)   63 11 0   83%
src / bioimageio / core / backends / tensorflow_backend.py TensorflowModelAdapter   23 23 0   0%
src / bioimageio / core / backends / tensorflow_backend.py KerasModelAdapter   21 5 0   76%
src / bioimageio / core / backends / tensorflow_backend.py (no class)   33 4 0   88%
src / bioimageio / core / backends / torchscript_backend.py TorchscriptModelAdapter   23 3 0   87%
src / bioimageio / core / backends / torchscript_backend.py (no class)   12 0 0   100%
src / bioimageio / core / block.py Block   10 1 0   90%
src / bioimageio / core / block.py (no class)   25 4 0   84%
src / bioimageio / core / block_meta.py LinearAxisTransform   1 0 0   100%
src / bioimageio / core / block_meta.py BlockMeta   19 5 0   74%
src / bioimageio / core / block_meta.py (no class)   106 15 0   86%
src / bioimageio / core / cli.py CmdBase   0 0 0   100%
src / bioimageio / core / cli.py ArgMixin   0 0 0   100%
src / bioimageio / core / cli.py WithSummaryLogging   1 0 0   100%
src / bioimageio / core / cli.py WithSource   7 1 0   86%
src / bioimageio / core / cli.py ValidateFormatCmd   3 3 0   0%
src / bioimageio / core / cli.py TestCmd   1 0 0   100%
src / bioimageio / core / cli.py PackageCmd   4 2 0   50%
src / bioimageio / core / cli.py UpdateCmdBase   24 6 1   75%
src / bioimageio / core / cli.py UpdateFormatCmd   1 0 0   100%
src / bioimageio / core / cli.py UpdateHashesCmd   1 0 0   100%
src / bioimageio / core / cli.py PredictCmd   103 18 0   83%
src / bioimageio / core / cli.py PredictBlockArtifactsCmd   10 10 0   0%
src / bioimageio / core / cli.py AddWeightsCmd   5 1 0   80%
src / bioimageio / core / cli.py EmptyCache   1 1 0   0%
src / bioimageio / core / cli.py Bioimageio   8 0 0   100%
src / bioimageio / core / cli.py (no class)   231 29 0   87%
src / bioimageio / core / commands.py (no class)   31 7 0   77%
src / bioimageio / core / common.py _LeftRight   6 0 1   100%
src / bioimageio / core / common.py CropWidth   0 0 0   100%
src / bioimageio / core / common.py Halo   0 0 0   100%
src / bioimageio / core / common.py OverlapWidth   0 0 0   100%
src / bioimageio / core / common.py PadWidth   0 0 0   100%
src / bioimageio / core / common.py SliceInfo   0 0 0   100%
src / bioimageio / core / common.py (no class)   48 0 0   100%
src / bioimageio / core / dataset.py (no class)   3 3 0   0%
src / bioimageio / core / digest_spec.py IO_SampleBlockMeta   0 0 0   100%
src / bioimageio / core / digest_spec.py (no class)   217 32 3   85%
src / bioimageio / core / io.py _SerializedDatasetStatsEntry   0 0 0   100%
src / bioimageio / core / io.py (no class)   91 15 0   84%
src / bioimageio / core / model_adapters.py (no class)   5 1 0   80%
src / bioimageio / core / prediction.py (no class)   57 22 0   61%
src / bioimageio / core / proc_ops.py AddKnownDatasetStats   2 2 0   0%
src / bioimageio / core / proc_ops.py UpdateStats   5 2 0   60%
src / bioimageio / core / proc_ops.py Binarize   7 6 1   14%
src / bioimageio / core / proc_ops.py Clip   47 15 1   68%
src / bioimageio / core / proc_ops.py EnsureDtype   5 2 0   60%
src / bioimageio / core / proc_ops.py ScaleLinear   20 10 1   50%
src / bioimageio / core / proc_ops.py ScaleMeanVariance   21 6 0   71%
src / bioimageio / core / proc_ops.py ScaleRange   25 5 0   80%
src / bioimageio / core / proc_ops.py Sigmoid   6 2 0   67%
src / bioimageio / core / proc_ops.py Softmax   9 5 0   44%
src / bioimageio / core / proc_ops.py _StardistPostprocessingBase   20 20 0   0%
src / bioimageio / core / proc_ops.py StardistPostprocessing2D   7 7 0   0%
src / bioimageio / core / proc_ops.py StardistPostprocessing3D   12 12 0   0%
src / bioimageio / core / proc_ops.py ZeroMeanUnitVariance   14 4 0   71%
src / bioimageio / core / proc_ops.py FixedZeroMeanUnitVariance   16 14 1   12%
src / bioimageio / core / proc_ops.py (no class)   247 21 3   91%
src / bioimageio / core / proc_setup.py PreAndPostprocessing   0 0 0   100%
src / bioimageio / core / proc_setup.py _ProcessingCallables   0 0 0   100%
src / bioimageio / core / proc_setup.py _ApplyProcs   4 0 0   100%
src / bioimageio / core / proc_setup.py RequiredMeasures   0 0 0   100%
src / bioimageio / core / proc_setup.py RequiredDatasetMeasures   0 0 0   100%
src / bioimageio / core / proc_setup.py RequiredSampleMeasures   0 0 0   100%
src / bioimageio / core / proc_setup.py (no class)   74 3 1   96%
src / bioimageio / core / sample.py Sample   23 5 0   78%
src / bioimageio / core / sample.py SampleBlockBase   2 2 0   0%
src / bioimageio / core / sample.py LinearSampleAxisTransform   0 0 0   100%
src / bioimageio / core / sample.py SampleBlockMeta   11 1 0   91%
src / bioimageio / core / sample.py SampleBlock   2 0 0   100%
src / bioimageio / core / sample.py SampleBlockWithOrigin   0 0 0   100%
src / bioimageio / core / sample.py _ConsolidatedMemberBlocks   7 0 0   100%
src / bioimageio / core / sample.py (no class)   73 0 0   100%
src / bioimageio / core / stat_calculators.py MeanCalculator   30 30 0   0%
src / bioimageio / core / stat_calculators.py MeanVarStdCalculator   50 4 0   92%
src / bioimageio / core / stat_calculators.py SampleQuantilesCalculator   9 0 0   100%
src / bioimageio / core / stat_calculators.py MeanQuantilesCalculator   20 3 0   85%
src / bioimageio / core / stat_calculators.py CrickQuantilesCalculator   37 4 0   89%
src / bioimageio / core / stat_calculators.py NaiveSampleMeasureCalculator   4 4 0   0%
src / bioimageio / core / stat_calculators.py StatsCalculator   37 10 0   73%
src / bioimageio / core / stat_calculators.py (no class)   141 26 1   82%
src / bioimageio / core / stat_measures.py SampleLike   0 0 1   100%
src / bioimageio / core / stat_measures.py MeasureBase   0 0 0   100%
src / bioimageio / core / stat_measures.py SampleMeasureBase   0 0 1   100%
src / bioimageio / core / stat_measures.py DatasetMeasureBase   0 0 0   100%
src / bioimageio / core / stat_measures.py _Mean   0 0 0   100%
src / bioimageio / core / stat_measures.py SampleMean   3 0 0   100%
src / bioimageio / core / stat_measures.py DatasetMean   1 0 0   100%
src / bioimageio / core / stat_measures.py _Std   0 0 0   100%
src / bioimageio / core / stat_measures.py SampleStd   3 0 0   100%
src / bioimageio / core / stat_measures.py DatasetStd   1 0 0   100%
src / bioimageio / core / stat_measures.py _Var   0 0 0   100%
src / bioimageio / core / stat_measures.py SampleVar   3 0 0   100%
src / bioimageio / core / stat_measures.py DatasetVar   1 0 0   100%
src / bioimageio / core / stat_measures.py _Quantile   2 0 0   100%
src / bioimageio / core / stat_measures.py SampleQuantile   4 0 0   100%
src / bioimageio / core / stat_measures.py DatasetQuantile   2 0 0   100%
src / bioimageio / core / stat_measures.py (no class)   77 4 5   95%
src / bioimageio / core / tensor.py Tensor   153 34 2   78%
src / bioimageio / core / tensor.py (no class)   92 8 2   91%
src / bioimageio / core / utils / __init__.py (no class)   1 0 0   100%
src / bioimageio / core / utils / _compare.py (no class)   19 3 1   84%
src / bioimageio / core / utils / _type_guards.py (no class)   4 0 0   100%
src / bioimageio / core / weight_converters / __init__.py (no class)   2 0 0   100%
src / bioimageio / core / weight_converters / _add_weights.py (no class)   80 27 0   66%
src / bioimageio / core / weight_converters / _utils_torch_onnx.py (no class)   88 26 3   70%
src / bioimageio / core / weight_converters / keras_to_tensorflow.py (no class)   72 72 0   0%
src / bioimageio / core / weight_converters / pytorch_to_onnx.py (no class)   10 1 0   90%
src / bioimageio / core / weight_converters / pytorch_to_torchscript.py (no class)   20 1 0   95%
src / bioimageio / core / weight_converters / torchscript_to_onnx.py (no class)   16 1 0   94%
Total     4007 900 145   78%

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