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| src / bioimageio / spec / generic / v0_2.py |
GenericModelDescrBase.accept_author_strings |
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5 |
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GenericModelDescrBase._warn_empty_cite |
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3 |
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GenericModelDescrBase.warn_about_tag_categories |
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8 |
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GenericDescrBase._convert_from_older_format |
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2 |
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GenericDescrBase.deprecated_spdx_license |
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9 |
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1 |
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GenericDescr.check_specific_types |
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(no function) |
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148 |
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_has_no_slash |
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1 |
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Author._validate_github_user |
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_AuthorConv._convert |
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Maintainer.validate_github_user |
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_MaintainerConv._convert |
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CiteEntry._check_doi_or_url |
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LinkedResourceBase._remove_version_number |
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Config._validate_extra_fields |
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Config.__getitem__ |
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Config.__setitem__ |
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GenericModelDescrBase._check_maintainers_exist |
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GenericModelDescrBase.warn_about_tag_categories |
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8 |
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GenericModelDescrBase._remove_version_number |
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GenericDescrBase._convert_from_older_format |
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GenericDescrBase.convert_from_old_format_wo_validation |
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GenericDescr.check_specific_types |
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(no function) |
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convert_model_from_v0_3_to_0_4_0 |
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_convert_model_v0_3_1_to_v0_3_2 |
|
30 |
30 |
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_convert_model_v0_3_2_to_v0_3_3 |
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(no function) |
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convert_from_older_format |
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31 |
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_convert_model_from_v0_4_0_to_0_4_1 |
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_convert_model_from_v0_4_4_to_0_4_5 |
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(no function) |
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CallableFromDepencencyNode._check_submodules |
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CallableFromDepencency._get_data |
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CallableFromDepencency.module_name |
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CallableFromDepencency.callable_name |
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CallableFromFile._get_data |
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CallableFromFile.source_file |
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CallableFromFile.callable_name |
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Dependencies._get_data |
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Dependencies.manager |
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Dependencies.file |
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1 |
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WeightsEntryDescrBase.check_parent_is_not_self |
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3 |
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KerasHdf5WeightsDescr._tfv |
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3 |
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OnnxWeightsDescr._ov |
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3 |
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PytorchStateDictWeightsDescr.check_architecture_sha256 |
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6 |
2 |
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PytorchStateDictWeightsDescr._ptv |
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3 |
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TorchscriptWeightsDescr._ptv |
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3 |
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TensorflowJsWeightsDescr._tfv |
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3 |
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TensorflowSavedModelBundleWeightsDescr._tfv |
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WeightsDescr.check_one_entry |
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3 |
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WeightsDescr.__getitem__ |
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16 |
16 |
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ParameterizedInputShape.__len__ |
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ImplicitOutputShape.__len__ |
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ImplicitOutputShape.matching_lengths |
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6 |
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ScaleLinearKwargs.either_gain_or_offset |
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SigmoidDescr.kwargs |
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ZeroMeanUnitVarianceKwargs.mean_and_std_match_mode |
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ScaleRangeKwargs.min_smaller_max |
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InputTensorDescr.zero_batch_step_and_one_batch_size |
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InputTensorDescr.validate_preprocessing_kwargs |
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OutputTensorDescr.matching_halo_length |
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OutputTensorDescr.validate_postprocessing_kwargs |
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7 |
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package_weights |
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11 |
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91% |
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4 |
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75% |
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4 |
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0 |
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ModelDescr.minimum_shape2valid_output |
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17 |
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ModelDescr._get_min_shape |
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ModelDescr.validate_tensor_references_in_inputs |
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10 |
2 |
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80% |
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ModelDescr.validate_tensor_references_in_outputs |
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8 |
3 |
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62% |
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ModelDescr.ignore_url_parent |
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3 |
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0 |
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ModelDescr._convert_from_older_format |
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2 |
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ModelDescr.get_input_test_arrays |
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3 |
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ModelDescr.get_output_test_arrays |
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3 |
3 |
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(no function) |
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397 |
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18 |
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_normalize_axis_id |
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5 |
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1 |
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ParameterizedSize.validate_size |
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5 |
2 |
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60% |
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ParameterizedSize.get_size |
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1 |
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ParameterizedSize.get_n |
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1 |
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0 |
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100% |
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DataDependentSize._validate_max_gt_min |
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3 |
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67% |
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DataDependentSize.validate_size |
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5 |
2 |
0 |
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60% |
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SizeReference.get_size |
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13 |
4 |
1 |
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69% |
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SizeReference._get_unit |
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1 |
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BatchAxis.scale |
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1 |
1 |
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BatchAxis.concatenable |
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BatchAxis.unit |
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1 |
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ChannelAxis.size |
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1 |
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0 |
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100% |
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ChannelAxis.concatenable |
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1 |
1 |
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ChannelAxis.scale |
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1 |
1 |
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ChannelAxis.unit |
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1 |
1 |
0 |
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0% |
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IndexAxisBase.scale |
|
1 |
1 |
0 |
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0% |
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IndexAxisBase.unit |
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1 |
1 |
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_get_halo_axis_discriminator_value |
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3 |
0 |
0 |
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| src / bioimageio / spec / model / v0_5.py |
NominalOrOrdinalDataDescr._validate_values_match_type |
|
15 |
5 |
0 |
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67% |
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NominalOrOrdinalDataDescr.range |
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3 |
3 |
0 |
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0% |
| src / bioimageio / spec / model / v0_5.py |
IntervalOrRatioDataDescr._replace_inf |
|
7 |
0 |
0 |
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100% |
| src / bioimageio / spec / model / v0_5.py |
ScaleLinearKwargs._validate |
|
3 |
1 |
0 |
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67% |
| src / bioimageio / spec / model / v0_5.py |
ScaleLinearAlongAxisKwargs._validate |
|
11 |
5 |
0 |
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55% |
| src / bioimageio / spec / model / v0_5.py |
SigmoidDescr.kwargs |
|
1 |
0 |
0 |
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100% |
| src / bioimageio / spec / model / v0_5.py |
FixedZeroMeanUnitVarianceAlongAxisKwargs._mean_and_std_match |
|
3 |
1 |
0 |
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67% |
| src / bioimageio / spec / model / v0_5.py |
ScaleRangeKwargs.min_smaller_max |
|
3 |
1 |
0 |
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67% |
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TensorDescrBase.shape |
|
1 |
1 |
0 |
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0% |
| src / bioimageio / spec / model / v0_5.py |
TensorDescrBase._validate_axes |
|
10 |
2 |
0 |
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80% |
| src / bioimageio / spec / model / v0_5.py |
TensorDescrBase._validate_sample_tensor |
|
22 |
3 |
1 |
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86% |
| src / bioimageio / spec / model / v0_5.py |
TensorDescrBase.dtype |
|
3 |
1 |
0 |
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67% |
| src / bioimageio / spec / model / v0_5.py |
TensorDescrBase._check_data_type_across_channels |
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6 |
0 |
0 |
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100% |
| src / bioimageio / spec / model / v0_5.py |
TensorDescrBase._check_data_matches_channelaxis |
|
11 |
2 |
0 |
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82% |
| src / bioimageio / spec / model / v0_5.py |
TensorDescrBase.get_axis_sizes_for_array |
|
3 |
1 |
0 |
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67% |
| src / bioimageio / spec / model / v0_5.py |
InputTensorDescr._validate_preprocessing_kwargs |
|
17 |
3 |
0 |
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82% |
| src / bioimageio / spec / model / v0_5.py |
convert_axes |
|
56 |
21 |
0 |
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62% |
| src / bioimageio / spec / model / v0_5.py |
_axes_letters_to_ids |
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3 |
1 |
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67% |
| src / bioimageio / spec / model / v0_5.py |
_get_complement_v04_axis |
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7 |
7 |
0 |
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0% |
| src / bioimageio / spec / model / v0_5.py |
_convert_proc |
|
45 |
33 |
1 |
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27% |
| src / bioimageio / spec / model / v0_5.py |
_InputTensorConv._convert |
|
8 |
0 |
0 |
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100% |
| src / bioimageio / spec / model / v0_5.py |
OutputTensorDescr._validate_postprocessing_kwargs |
|
15 |
5 |
0 |
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67% |
| src / bioimageio / spec / model / v0_5.py |
_OutputTensorConv._convert |
|
5 |
1 |
0 |
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80% |
| src / bioimageio / spec / model / v0_5.py |
validate_tensors |
|
44 |
12 |
1 |
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73% |
| src / bioimageio / spec / model / v0_5.py |
validate_tensors.e_msg |
|
1 |
1 |
0 |
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0% |
| src / bioimageio / spec / model / v0_5.py |
ArchitectureFromFileDescr._serialize |
|
1 |
0 |
0 |
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100% |
| src / bioimageio / spec / model / v0_5.py |
_ArchFileConv._convert |
|
8 |
4 |
0 |
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50% |
| src / bioimageio / spec / model / v0_5.py |
_ArchLibConv._convert |
|
3 |
3 |
0 |
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0% |
| src / bioimageio / spec / model / v0_5.py |
WeightsEntryDescrBase._validate |
|
3 |
1 |
0 |
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67% |
| src / bioimageio / spec / model / v0_5.py |
WeightsEntryDescrBase._serialize |
|
1 |
0 |
0 |
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100% |
| src / bioimageio / spec / model / v0_5.py |
OnnxWeightsDescr._validate_external_data_unique_file_name |
|
3 |
1 |
0 |
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67% |
| src / bioimageio / spec / model / v0_5.py |
WeightsDescr.check_entries |
|
15 |
2 |
0 |
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87% |
| src / bioimageio / spec / model / v0_5.py |
WeightsDescr.__getitem__ |
|
16 |
16 |
0 |
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0% |
| src / bioimageio / spec / model / v0_5.py |
WeightsDescr.__setitem__ |
|
0 |
0 |
1 |
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100% |
| src / bioimageio / spec / model / v0_5.py |
WeightsDescr.__setitem__ |
|
0 |
0 |
1 |
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100% |
| src / bioimageio / spec / model / v0_5.py |
WeightsDescr.__setitem__ |
|
0 |
0 |
1 |
|
100% |
| src / bioimageio / spec / model / v0_5.py |
WeightsDescr.__setitem__ |
|
0 |
0 |
1 |
|
100% |
| src / bioimageio / spec / model / v0_5.py |
WeightsDescr.__setitem__ |
|
0 |
0 |
1 |
|
100% |
| src / bioimageio / spec / model / v0_5.py |
WeightsDescr.__setitem__ |
|
0 |
0 |
1 |
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100% |
| src / bioimageio / spec / model / v0_5.py |
WeightsDescr.__setitem__ |
|
25 |
25 |
0 |
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0% |
| src / bioimageio / spec / model / v0_5.py |
WeightsDescr.available_formats |
|
1 |
0 |
0 |
|
100% |
| src / bioimageio / spec / model / v0_5.py |
WeightsDescr.missing_formats |
|
1 |
0 |
0 |
|
100% |
| src / bioimageio / spec / model / v0_5.py |
ModelDescr._validate_documentation |
|
7 |
0 |
0 |
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100% |
| src / bioimageio / spec / model / v0_5.py |
ModelDescr._validate_input_axes |
|
6 |
0 |
0 |
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100% |
| src / bioimageio / spec / model / v0_5.py |
ModelDescr._validate_axis |
|
28 |
11 |
1 |
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61% |
| src / bioimageio / spec / model / v0_5.py |
ModelDescr._validate_test_tensors |
|
19 |
3 |
0 |
|
84% |
| src / bioimageio / spec / model / v0_5.py |
ModelDescr._validate_tensor_references_in_proc_kwargs |
|
17 |
4 |
0 |
|
76% |
| src / bioimageio / spec / model / v0_5.py |
ModelDescr._validate_tensor_ids |
|
10 |
2 |
0 |
|
80% |
| src / bioimageio / spec / model / v0_5.py |
ModelDescr._get_axes_with_parameterized_size |
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1 |
1 |
0 |
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0% |
| src / bioimageio / spec / model / v0_5.py |
ModelDescr._get_axes_with_independent_size |
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1 |
0 |
0 |
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100% |
| src / bioimageio / spec / model / v0_5.py |
ModelDescr._validate_output_axes |
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7 |
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0 |
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100% |
| src / bioimageio / spec / model / v0_5.py |
ModelDescr._validate_parent_is_not_self |
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3 |
1 |
0 |
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67% |
| src / bioimageio / spec / model / v0_5.py |
ModelDescr._add_default_cover |
|
8 |
6 |
0 |
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25% |
| src / bioimageio / spec / model / v0_5.py |
ModelDescr.get_input_test_arrays |
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1 |
1 |
0 |
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0% |
| src / bioimageio / spec / model / v0_5.py |
ModelDescr.get_output_test_arrays |
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1 |
1 |
0 |
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0% |
| src / bioimageio / spec / model / v0_5.py |
ModelDescr._get_test_arrays |
|
8 |
8 |
0 |
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0% |
| src / bioimageio / spec / model / v0_5.py |
ModelDescr.get_batch_size |
|
12 |
12 |
0 |
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0% |
| src / bioimageio / spec / model / v0_5.py |
ModelDescr.get_output_tensor_sizes |
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4 |
4 |
0 |
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0% |
| src / bioimageio / spec / model / v0_5.py |
ModelDescr.get_ns |
|
10 |
10 |
1 |
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0% |
| src / bioimageio / spec / model / v0_5.py |
ModelDescr.get_tensor_sizes |
|
2 |
2 |
0 |
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0% |
| src / bioimageio / spec / model / v0_5.py |
ModelDescr.get_axis_sizes |
|
29 |
2 |
0 |
|
93% |
| src / bioimageio / spec / model / v0_5.py |
ModelDescr.get_axis_sizes.get_axis_size |
|
31 |
7 |
1 |
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77% |
| src / bioimageio / spec / model / v0_5.py |
ModelDescr._convert |
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2 |
0 |
0 |
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100% |
| src / bioimageio / spec / model / v0_5.py |
ModelDescr.convert_from_old_format_wo_validation |
|
20 |
1 |
0 |
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95% |
| src / bioimageio / spec / model / v0_5.py |
_ModelConv._convert |
|
7 |
0 |
3 |
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100% |
| src / bioimageio / spec / model / v0_5.py |
_ModelConv._convert.conv_authors |
|
2 |
0 |
0 |
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100% |
| src / bioimageio / spec / model / v0_5.py |
generate_covers |
|
20 |
20 |
0 |
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0% |
| src / bioimageio / spec / model / v0_5.py |
generate_covers.squeeze |
|
4 |
4 |
0 |
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0% |
| src / bioimageio / spec / model / v0_5.py |
generate_covers.normalize |
|
4 |
4 |
0 |
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0% |
| src / bioimageio / spec / model / v0_5.py |
generate_covers.to_2d_image |
|
68 |
68 |
0 |
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0% |
| src / bioimageio / spec / model / v0_5.py |
generate_covers.create_diagonal_split_image |
|
12 |
12 |
0 |
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0% |
| src / bioimageio / spec / model / v0_5.py |
(no function) |
|
619 |
0 |
57 |
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100% |
| src / bioimageio / spec / notebook / __init__.py |
(no function) |
|
9 |
0 |
0 |
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100% |
| src / bioimageio / spec / notebook / v0_2.py |
(no function) |
|
36 |
0 |
2 |
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100% |
| src / bioimageio / spec / notebook / v0_3.py |
(no function) |
|
36 |
0 |
2 |
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100% |
| src / bioimageio / spec / summary.py |
ErrorEntry.traceback_rich |
|
1 |
1 |
0 |
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0% |
| src / bioimageio / spec / summary.py |
ErrorEntry.model_post_init |
|
8 |
7 |
0 |
|
12% |
| src / bioimageio / spec / summary.py |
WarningEntry.severity_name |
|
1 |
1 |
0 |
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0% |
| src / bioimageio / spec / summary.py |
format_loc |
|
14 |
6 |
1 |
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57% |
| src / bioimageio / spec / summary.py |
ValidationDetail._save_conda_compare |
|
1 |
0 |
0 |
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100% |
| src / bioimageio / spec / summary.py |
ValidationDetail._load_legacy |
|
5 |
1 |
0 |
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80% |
| src / bioimageio / spec / summary.py |
ValidationDetail.conda_compare |
|
13 |
11 |
0 |
|
15% |
| src / bioimageio / spec / summary.py |
ValidationDetail.status_icon |
|
3 |
1 |
0 |
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67% |
| src / bioimageio / spec / summary.py |
ValidationSummary._save_conda_list |
|
1 |
0 |
0 |
|
100% |
| src / bioimageio / spec / summary.py |
ValidationSummary.conda_list |
|
4 |
0 |
0 |
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100% |
| src / bioimageio / spec / summary.py |
ValidationSummary.status_icon |
|
5 |
1 |
0 |
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80% |
| src / bioimageio / spec / summary.py |
ValidationSummary.errors |
|
1 |
0 |
0 |
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100% |
| src / bioimageio / spec / summary.py |
ValidationSummary.warnings |
|
1 |
0 |
0 |
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100% |
| src / bioimageio / spec / summary.py |
ValidationSummary.format |
|
1 |
1 |
0 |
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0% |
| src / bioimageio / spec / summary.py |
ValidationSummary.format_md |
|
1 |
0 |
0 |
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100% |
| src / bioimageio / spec / summary.py |
ValidationSummary.format_html |
|
2 |
2 |
0 |
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0% |
| src / bioimageio / spec / summary.py |
ValidationSummary.display |
|
9 |
4 |
0 |
|
56% |
| src / bioimageio / spec / summary.py |
ValidationSummary.add_detail |
|
6 |
4 |
0 |
|
33% |
| src / bioimageio / spec / summary.py |
ValidationSummary.log |
|
11 |
11 |
0 |
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0% |
| src / bioimageio / spec / summary.py |
ValidationSummary.save |
|
18 |
6 |
0 |
|
67% |
| src / bioimageio / spec / summary.py |
ValidationSummary.save_json |
|
4 |
0 |
0 |
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100% |
| src / bioimageio / spec / summary.py |
ValidationSummary.save_markdown |
|
4 |
0 |
0 |
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100% |
| src / bioimageio / spec / summary.py |
ValidationSummary.save_html |
|
4 |
4 |
0 |
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0% |
| src / bioimageio / spec / summary.py |
ValidationSummary.load_json |
|
2 |
0 |
0 |
|
100% |
| src / bioimageio / spec / summary.py |
ValidationSummary._convert_old_env |
|
3 |
1 |
0 |
|
67% |
| src / bioimageio / spec / summary.py |
ValidationSummary._format |
|
1 |
0 |
0 |
|
100% |
| src / bioimageio / spec / summary.py |
_format_summary |
|
33 |
8 |
0 |
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76% |
| src / bioimageio / spec / summary.py |
_format_summary.add_part |
|
3 |
0 |
0 |
|
100% |
| src / bioimageio / spec / summary.py |
_format_summary.add_section |
|
4 |
4 |
1 |
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0% |
| src / bioimageio / spec / summary.py |
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|
1 |
1 |
0 |
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0% |
| src / bioimageio / spec / summary.py |
_format_summary.add_as_details_below |
|
10 |
10 |
0 |
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0% |
| src / bioimageio / spec / summary.py |
_format_summary.add_as_details_below.make_link |
|
7 |
7 |
1 |
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0% |
| src / bioimageio / spec / summary.py |
_format_summary.format_code |
|
12 |
12 |
0 |
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0% |
| src / bioimageio / spec / summary.py |
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|
9 |
9 |
1 |
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| src / bioimageio / spec / summary.py |
_format_summary.format_text |
|
3 |
1 |
0 |
|
67% |
| src / bioimageio / spec / summary.py |
_format_summary.get_info_table |
|
11 |
2 |
0 |
|
82% |
| src / bioimageio / spec / summary.py |
_format_summary.get_details_table |
|
18 |
8 |
0 |
|
56% |
| src / bioimageio / spec / summary.py |
_format_summary.get_details_table.append_detail |
|
9 |
1 |
0 |
|
89% |
| src / bioimageio / spec / summary.py |
_format_md_table |
|
8 |
0 |
0 |
|
100% |
| src / bioimageio / spec / summary.py |
_format_html_table |
|
6 |
6 |
0 |
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0% |
| src / bioimageio / spec / summary.py |
_format_html_table.get_line |
|
1 |
1 |
0 |
|
0% |
| src / bioimageio / spec / summary.py |
(no function) |
|
127 |
0 |
0 |
|
100% |
| src / bioimageio / spec / utils.py |
get_spdx_licenses |
|
2 |
0 |
0 |
|
100% |
| src / bioimageio / spec / utils.py |
get_bioimageio_json_schema |
|
2 |
0 |
0 |
|
100% |
| src / bioimageio / spec / utils.py |
(no function) |
|
21 |
0 |
0 |
|
100% |