Coverage report: 80%

Files Functions Classes

coverage.py v7.8.0, created at 2025-04-02 14:21 +0000

File function statements missing excluded coverage
bioimageio/spec/__init__.py (no function) 18 0 0 100%
bioimageio/spec/_description.py dump_description 1 0 0 100%
bioimageio/spec/_description.py _get_rd_class 1 0 0 100%
bioimageio/spec/_description.py build_description 0 0 0 100%
bioimageio/spec/_description.py build_description 0 0 0 100%
bioimageio/spec/_description.py build_description 1 0 0 100%
bioimageio/spec/_description.py validate_format 4 0 0 100%
bioimageio/spec/_description.py ensure_description_is_model 8 8 0 0%
bioimageio/spec/_description.py ensure_description_is_dataset 8 8 0 0%
bioimageio/spec/_description.py (no function) 38 0 0 100%
bioimageio/spec/_description_impl.py get_rd_class_impl 13 1 0 92%
bioimageio/spec/_description_impl.py build_description_impl 24 2 0 92%
bioimageio/spec/_description_impl.py (no function) 11 0 0 100%
bioimageio/spec/_get_conda_env.py get_conda_env 17 8 1 53%
bioimageio/spec/_get_conda_env.py _get_default_pytorch_env 77 5 0 94%
bioimageio/spec/_get_conda_env.py _get_default_onnx_env 3 1 0 67%
bioimageio/spec/_get_conda_env.py _get_default_tf_env 3 3 0 0%
bioimageio/spec/_get_conda_env.py _get_env_from_deps 18 14 1 22%
bioimageio/spec/_get_conda_env.py (no function) 15 0 0 100%
bioimageio/spec/_internal/__init__.py (no function) 1 0 0 100%
bioimageio/spec/_internal/_generated_spdx_license_literals.py (no function) 3 0 0 100%
bioimageio/spec/_internal/_settings.py Settings.github_auth 3 1 0 67%
bioimageio/spec/_internal/_settings.py (no function) 36 0 0 100%
bioimageio/spec/_internal/common_nodes.py NodeWithExplicitlySetFields.__pydantic_init_subclass__ 11 0 0 100%
bioimageio/spec/_internal/common_nodes.py NodeWithExplicitlySetFields._set_fields_explicitly 5 0 0 100%
bioimageio/spec/_internal/common_nodes.py ResourceDescrBase._ignore_future_patch 10 1 0 90%
bioimageio/spec/_internal/common_nodes.py ResourceDescrBase._set_init_validation_summary 4 0 0 100%
bioimageio/spec/_internal/common_nodes.py ResourceDescrBase.validation_summary 2 0 0 100%
bioimageio/spec/_internal/common_nodes.py ResourceDescrBase.root 1 1 0 0%
bioimageio/spec/_internal/common_nodes.py ResourceDescrBase.file_name 1 1 0 0%
bioimageio/spec/_internal/common_nodes.py ResourceDescrBase.__pydantic_init_subclass__ 7 0 0 100%
bioimageio/spec/_internal/common_nodes.py ResourceDescrBase.load 10 0 0 100%
bioimageio/spec/_internal/common_nodes.py ResourceDescrBase._load_impl 31 13 0 58%
bioimageio/spec/_internal/common_nodes.py ResourceDescrBase.package 12 3 0 75%
bioimageio/spec/_internal/common_nodes.py ResourceDescrBase.get_package_content 5 0 0 100%
bioimageio/spec/_internal/common_nodes.py KwargsNode.get 1 0 0 100%
bioimageio/spec/_internal/common_nodes.py KwargsNode.__getitem__ 3 1 0 67%
bioimageio/spec/_internal/common_nodes.py KwargsNode.__contains__ 1 0 0 100%
bioimageio/spec/_internal/common_nodes.py (no function) 67 0 14 100%
bioimageio/spec/_internal/constants.py (no function) 27 0 0 100%
bioimageio/spec/_internal/field_validation.py is_valid_yaml_leaf_value 1 0 0 100%
bioimageio/spec/_internal/field_validation.py is_valid_yaml_key 1 0 0 100%
bioimageio/spec/_internal/field_validation.py is_valid_yaml_mapping 1 0 0 100%
bioimageio/spec/_internal/field_validation.py is_valid_yaml_sequence 1 0 0 100%
bioimageio/spec/_internal/field_validation.py is_valid_yaml_value 1 0 0 100%
bioimageio/spec/_internal/field_validation.py validate_unique_entries 3 0 0 100%
bioimageio/spec/_internal/field_validation.py validate_gh_user 18 5 0 72%
bioimageio/spec/_internal/field_validation.py (no function) 16 0 0 100%
bioimageio/spec/_internal/field_warning.py warn 4 0 0 100%
bioimageio/spec/_internal/field_warning.py call_validator_func 4 1 0 75%
bioimageio/spec/_internal/field_warning.py as_warning 2 0 0 100%
bioimageio/spec/_internal/field_warning.py as_warning.wrapper 5 0 0 100%
bioimageio/spec/_internal/field_warning.py AfterWarner.__post_init__ 1 0 0 100%
bioimageio/spec/_internal/field_warning.py BeforeWarner.__post_init__ 1 1 0 0%
bioimageio/spec/_internal/field_warning.py issue_warning 6 0 0 100%
bioimageio/spec/_internal/field_warning.py (no function) 34 1 2 97%
bioimageio/spec/_internal/gh_utils.py set_github_warning 6 2 0 67%
bioimageio/spec/_internal/gh_utils.py (no function) 4 0 0 100%
bioimageio/spec/_internal/io.py RelativePathBase.path 1 0 0 100%
bioimageio/spec/_internal/io.py RelativePathBase.absolute 1 0 0 100%
bioimageio/spec/_internal/io.py RelativePathBase.model_post_init 6 0 0 100%
bioimageio/spec/_internal/io.py RelativePathBase.__str__ 1 0 0 100%
bioimageio/spec/_internal/io.py RelativePathBase.__repr__ 1 1 0 0%
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bioimageio/spec/_internal/io.py RelativePathBase._get_absolute_impl 11 1 0 91%
bioimageio/spec/_internal/io.py RelativePathBase._validate 3 3 0 0%
bioimageio/spec/_internal/io.py RelativeFilePath.model_post_init 3 0 0 100%
bioimageio/spec/_internal/io.py RelativeFilePath.get_absolute 4 0 0 100%
bioimageio/spec/_internal/io.py RelativeDirectory.get_absolute 4 4 0 0%
bioimageio/spec/_internal/io.py validate_suffix 22 3 1 86%
bioimageio/spec/_internal/io.py WithSuffix.__get_pydantic_core_schema__ 4 1 0 75%
bioimageio/spec/_internal/io.py WithSuffix.validate 1 0 0 100%
bioimageio/spec/_internal/io.py wo_special_file_name 3 1 0 67%
bioimageio/spec/_internal/io.py _package 39 11 3 72%
bioimageio/spec/_internal/io.py has_valid_bioimageio_yaml_name 1 0 0 100%
bioimageio/spec/_internal/io.py is_valid_bioimageio_yaml_name 4 0 0 100%
bioimageio/spec/_internal/io.py identify_bioimageio_yaml_file_name 6 1 0 83%
bioimageio/spec/_internal/io.py find_bioimageio_yaml_file_name 9 5 0 44%
bioimageio/spec/_internal/io.py ensure_has_valid_bioimageio_yaml_name 3 3 0 0%
bioimageio/spec/_internal/io.py ensure_is_valid_bioimageio_yaml_name 3 1 0 67%
bioimageio/spec/_internal/io.py is_yaml_leaf_value 1 0 0 100%
bioimageio/spec/_internal/io.py is_yaml_list 1 0 0 100%
bioimageio/spec/_internal/io.py is_yaml_mapping 1 1 0 0%
bioimageio/spec/_internal/io.py is_yaml_value 1 0 0 100%
bioimageio/spec/_internal/io.py interprete_file_source 13 3 0 77%
bioimageio/spec/_internal/io.py _get_known_hash 3 1 0 67%
bioimageio/spec/_internal/io.py _get_unique_file_name 5 0 0 100%
bioimageio/spec/_internal/io.py Progressbar.update 1 0 0 100%
bioimageio/spec/_internal/io.py Progressbar.reset 1 0 0 100%
bioimageio/spec/_internal/io.py Progressbar.close 1 0 0 100%
bioimageio/spec/_internal/io.py extract 40 40 0 0%
bioimageio/spec/_internal/io.py resolve 64 15 1 77%
bioimageio/spec/_internal/io.py resolve_and_extract 5 5 0 0%
bioimageio/spec/_internal/io.py LightHttpFileDescr.download 1 0 0 100%
bioimageio/spec/_internal/io.py FileDescr._validate_sha256 3 0 0 100%
bioimageio/spec/_internal/io.py FileDescr.validate_sha256 14 0 0 100%
bioimageio/spec/_internal/io.py FileDescr.download 1 0 0 100%
bioimageio/spec/_internal/io.py extract_file_name 10 1 0 90%
bioimageio/spec/_internal/io.py get_sha256 16 0 0 100%
bioimageio/spec/_internal/io.py (no function) 132 1 2 99%
bioimageio/spec/_internal/io_basics.py (no function) 18 0 0 100%
bioimageio/spec/_internal/io_utils.py read_yaml 5 0 0 100%
bioimageio/spec/_internal/io_utils.py write_yaml 5 0 0 100%
bioimageio/spec/_internal/io_utils.py _sanitize_bioimageio_yaml 6 2 0 67%
bioimageio/spec/_internal/io_utils.py _open_bioimageio_rdf_in_zip 4 0 0 100%
bioimageio/spec/_internal/io_utils.py _open_bioimageio_zip 2 0 0 100%
bioimageio/spec/_internal/io_utils.py open_bioimageio_yaml 45 10 0 78%
bioimageio/spec/_internal/io_utils.py _get_id_map_impl 9 4 0 56%
bioimageio/spec/_internal/io_utils.py get_id_map 9 4 0 56%
bioimageio/spec/_internal/io_utils.py write_content_to_zip 10 0 0 100%
bioimageio/spec/_internal/io_utils.py write_zip 2 0 0 100%
bioimageio/spec/_internal/io_utils.py load_array 4 0 0 100%
bioimageio/spec/_internal/io_utils.py save_array 3 3 0 0%
bioimageio/spec/_internal/io_utils.py (no function) 42 0 0 100%
bioimageio/spec/_internal/license_id.py (no function) 10 0 0 100%
bioimageio/spec/_internal/node.py _node_title_generator 1 0 0 100%
bioimageio/spec/_internal/node.py Node.model_validate 8 0 0 100%
bioimageio/spec/_internal/node.py (no function) 10 0 0 100%
bioimageio/spec/_internal/node_converter.py Converter.__init__ 3 0 0 100%
bioimageio/spec/_internal/node_converter.py Converter._convert 0 0 0 100%
bioimageio/spec/_internal/node_converter.py Converter.convert 2 0 0 100%
bioimageio/spec/_internal/node_converter.py Converter.convert_as_dict 1 0 0 100%
bioimageio/spec/_internal/node_converter.py (no function) 16 0 0 100%
bioimageio/spec/_internal/packaging_context.py PackagingContext.replace 1 1 0 0%
bioimageio/spec/_internal/packaging_context.py PackagingContext.__enter__ 2 0 0 100%
bioimageio/spec/_internal/packaging_context.py PackagingContext.__exit__ 1 0 0 100%
bioimageio/spec/_internal/packaging_context.py (no function) 18 0 0 100%
bioimageio/spec/_internal/root_url.py RootHttpUrl.absolute 1 1 0 0%
bioimageio/spec/_internal/root_url.py RootHttpUrl.scheme 1 0 0 100%
bioimageio/spec/_internal/root_url.py RootHttpUrl.host 1 0 0 100%
bioimageio/spec/_internal/root_url.py RootHttpUrl.path 1 0 0 100%
bioimageio/spec/_internal/root_url.py RootHttpUrl.parent 6 1 0 83%
bioimageio/spec/_internal/root_url.py RootHttpUrl.parents 4 4 0 0%
bioimageio/spec/_internal/root_url.py (no function) 20 0 0 100%
bioimageio/spec/_internal/type_guards.py is_dict 1 0 0 100%
bioimageio/spec/_internal/type_guards.py is_set 1 1 0 0%
bioimageio/spec/_internal/type_guards.py is_kwargs 1 0 0 100%
bioimageio/spec/_internal/type_guards.py is_mapping 1 0 0 100%
bioimageio/spec/_internal/type_guards.py is_sequence 1 0 0 100%
bioimageio/spec/_internal/type_guards.py is_tuple 1 0 0 100%
bioimageio/spec/_internal/type_guards.py is_list 1 1 0 0%
bioimageio/spec/_internal/type_guards.py is_ndarray 1 1 0 0%
bioimageio/spec/_internal/type_guards.py (no function) 13 0 0 100%
bioimageio/spec/_internal/types.py _validate_identifier 3 0 0 100%
bioimageio/spec/_internal/types.py _validate_is_not_keyword 3 1 0 67%
bioimageio/spec/_internal/types.py _validate_datetime 5 1 0 80%
bioimageio/spec/_internal/types.py _validate_orcid_id 7 0 0 100%
bioimageio/spec/_internal/types.py _serialize_datetime_json 1 0 0 100%
bioimageio/spec/_internal/types.py Datetime.now 1 0 0 100%
bioimageio/spec/_internal/types.py _normalize_multiplication 3 1 0 67%
bioimageio/spec/_internal/types.py (no function) 45 0 0 100%
bioimageio/spec/_internal/url.py _validate_url 1 0 0 100%
bioimageio/spec/_internal/url.py _validate_url_impl 41 2 2 95%
bioimageio/spec/_internal/url.py HttpUrl._after_validator 6 0 0 100%
bioimageio/spec/_internal/url.py HttpUrl.exists 8 0 0 100%
bioimageio/spec/_internal/url.py (no function) 17 0 0 100%
bioimageio/spec/_internal/utils.py files 2 2 0 0%
bioimageio/spec/_internal/utils.py get_format_version_tuple 5 1 0 80%
bioimageio/spec/_internal/utils.py nest_dict 12 12 0 0%
bioimageio/spec/_internal/utils.py nest_dict_with_narrow_first_key 5 5 0 0%
bioimageio/spec/_internal/utils.py unindent 7 7 0 0%
bioimageio/spec/_internal/utils.py assert_all_params_set_explicitly 2 0 0 100%
bioimageio/spec/_internal/utils.py assert_all_params_set_explicitly.wrapper 19 0 0 100%
bioimageio/spec/_internal/utils.py get_os_friendly_file_name 1 0 0 100%
bioimageio/spec/_internal/utils.py (no function) 27 2 0 93%
bioimageio/spec/_internal/validated_string.py ValidatedString.__new__ 4 0 0 100%
bioimageio/spec/_internal/validated_string.py ValidatedString._after_validator 1 0 0 100%
bioimageio/spec/_internal/validated_string.py ValidatedString.__get_pydantic_core_schema__ 1 0 0 100%
bioimageio/spec/_internal/validated_string.py ValidatedString.__get_pydantic_json_schema__ 5 0 0 100%
bioimageio/spec/_internal/validated_string.py (no function) 15 0 0 100%
bioimageio/spec/_internal/validated_string_with_inner_node.py ValidatedStringWithInnerNode._serialize 2 2 0 0%
bioimageio/spec/_internal/validated_string_with_inner_node.py ValidatedStringWithInnerNode._get_data 1 0 0 100%
bioimageio/spec/_internal/validated_string_with_inner_node.py ValidatedStringWithInnerNode._after_validator 3 0 0 100%
bioimageio/spec/_internal/validated_string_with_inner_node.py (no function) 14 0 0 100%
bioimageio/spec/_internal/validation_context.py ValidationContext.summary 6 1 0 83%
bioimageio/spec/_internal/validation_context.py ValidationContext.__enter__ 2 0 0 100%
bioimageio/spec/_internal/validation_context.py ValidationContext.__exit__ 1 0 0 100%
bioimageio/spec/_internal/validation_context.py ValidationContext.replace 3 0 0 100%
bioimageio/spec/_internal/validation_context.py ValidationContext.source_name 11 2 0 82%
bioimageio/spec/_internal/validation_context.py get_validation_context 1 0 0 100%
bioimageio/spec/_internal/validation_context.py (no function) 51 0 0 100%
bioimageio/spec/_internal/validator_annotations.py AfterValidator.__str__ 1 1 0 0%
bioimageio/spec/_internal/validator_annotations.py BeforeValidator.__str__ 1 1 0 0%
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bioimageio/spec/_internal/validator_annotations.py RestrictCharacters.validate 3 0 0 100%
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bioimageio/spec/_internal/version_type.py Version.is_devrelease 1 0 0 100%
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bioimageio/spec/_internal/version_type.py Version.minor 1 0 0 100%
bioimageio/spec/_internal/version_type.py Version.micro 1 0 0 100%
bioimageio/spec/_internal/version_type.py (no function) 38 0 0 100%
bioimageio/spec/_internal/warning_levels.py (no function) 12 0 0 100%
bioimageio/spec/_io.py load_description 0 0 0 100%
bioimageio/spec/_io.py load_description 0 0 0 100%
bioimageio/spec/_io.py load_description 7 0 0 100%
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bioimageio/spec/_package.py save_bioimageio_package 9 2 0 78%
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bioimageio/spec/application/__init__.py (no function) 9 0 0 100%
bioimageio/spec/application/v0_2.py (no function) 35 0 2 100%
bioimageio/spec/application/v0_3.py (no function) 38 0 2 100%
bioimageio/spec/common.py (no function) 8 0 0 100%
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bioimageio/spec/conda_env.py PipDeps.__lt__ 3 3 0 0%
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bioimageio/spec/conda_env.py (no function) 22 0 0 100%
bioimageio/spec/dataset/__init__.py (no function) 9 0 0 100%
bioimageio/spec/dataset/v0_2.py (no function) 31 0 2 100%
bioimageio/spec/dataset/v0_3.py DatasetDescr._convert 6 1 0 83%
bioimageio/spec/dataset/v0_3.py (no function) 42 0 2 100%
bioimageio/spec/generic/__init__.py (no function) 9 0 0 100%
bioimageio/spec/generic/_v0_2_converter.py convert_from_older_format 22 9 0 59%
bioimageio/spec/generic/_v0_2_converter.py remove_slashes_from_names 8 0 0 100%
bioimageio/spec/generic/_v0_2_converter.py remove_slashes_from_names.rm_slashes_in_person_name 6 1 0 83%
bioimageio/spec/generic/_v0_2_converter.py remove_doi_prefix 19 1 0 95%
bioimageio/spec/generic/_v0_2_converter.py remove_gh_prefix 3 0 0 100%
bioimageio/spec/generic/_v0_2_converter.py remove_gh_prefix.rm_gh 6 1 0 83%
bioimageio/spec/generic/_v0_2_converter.py (no function) 9 0 0 100%
bioimageio/spec/generic/_v0_3_converter.py convert_from_older_format 11 1 0 91%
bioimageio/spec/generic/_v0_3_converter.py convert_attachments 3 0 0 100%
bioimageio/spec/generic/_v0_3_converter.py convert_cover_images 18 7 0 61%
bioimageio/spec/generic/_v0_3_converter.py (no function) 10 0 0 100%
bioimageio/spec/generic/v0_2.py _remove_slashes 1 0 0 100%
bioimageio/spec/generic/v0_2.py CiteEntry.accept_prefixed_doi 6 2 0 67%
bioimageio/spec/generic/v0_2.py CiteEntry._check_doi_or_url 3 0 0 100%
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bioimageio/spec/generic/v0_2.py GenericDescr.check_specific_types 3 1 0 67%
bioimageio/spec/generic/v0_2.py (no function) 148 0 2 100%
bioimageio/spec/generic/v0_3.py _validate_md_suffix 1 0 0 100%
bioimageio/spec/generic/v0_3.py _has_no_slash 1 0 0 100%
bioimageio/spec/generic/v0_3.py Author._validate_gh_user 3 0 0 100%
bioimageio/spec/generic/v0_3.py _AuthorConv._convert 1 0 0 100%
bioimageio/spec/generic/v0_3.py Maintainer.validate_gh_user 1 0 0 100%
bioimageio/spec/generic/v0_3.py _MaintainerConv._convert 1 0 0 100%
bioimageio/spec/generic/v0_3.py CiteEntry._check_doi_or_url 3 1 0 67%
bioimageio/spec/generic/v0_3.py LinkedResourceBase._remove_version_number 5 1 0 80%
bioimageio/spec/generic/v0_3.py Config._validate_extra_fields 5 1 0 80%
bioimageio/spec/generic/v0_3.py GenericModelDescrBase.check_maintainers_exist 5 5 0 0%
bioimageio/spec/generic/v0_3.py GenericModelDescrBase.warn_about_tag_categories 8 8 0 0%
bioimageio/spec/generic/v0_3.py GenericModelDescrBase._remove_version_number 5 0 0 100%
bioimageio/spec/generic/v0_3.py GenericDescrBase._convert_from_older_format 2 0 0 100%
bioimageio/spec/generic/v0_3.py GenericDescrBase.convert_from_old_format_wo_validation 1 0 0 100%
bioimageio/spec/generic/v0_3.py GenericDescr.check_specific_types 3 1 0 67%
bioimageio/spec/generic/v0_3.py (no function) 144 0 2 100%
bioimageio/spec/model/__init__.py (no function) 9 0 0 100%
bioimageio/spec/model/_v0_3_converter.py convert_model_from_v0_3_to_0_4_0 34 34 0 0%
bioimageio/spec/model/_v0_3_converter.py _convert_model_v0_3_1_to_v0_3_2 30 30 0 0%
bioimageio/spec/model/_v0_3_converter.py _convert_model_v0_3_2_to_v0_3_3 8 8 0 0%
bioimageio/spec/model/_v0_3_converter.py (no function) 4 0 0 100%
bioimageio/spec/model/_v0_4_converter.py convert_from_older_format 31 3 0 90%
bioimageio/spec/model/_v0_4_converter.py _convert_model_from_v0_4_0_to_0_4_1 7 0 0 100%
bioimageio/spec/model/_v0_4_converter.py _convert_model_from_v0_4_4_to_0_4_5 4 1 0 75%
bioimageio/spec/model/_v0_4_converter.py (no function) 7 0 0 100%
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bioimageio/spec/model/v0_4.py CallableFromDepencency._get_data 2 0 0 100%
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bioimageio/spec/model/v0_4.py CallableFromDepencency.callable_name 1 1 0 0%
bioimageio/spec/model/v0_4.py CallableFromFile._get_data 2 0 0 100%
bioimageio/spec/model/v0_4.py CallableFromFile.source_file 1 1 0 0%
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bioimageio/spec/model/v0_4.py WeightsDescr.missing_formats 1 1 0 0%
bioimageio/spec/model/v0_4.py WeightsEntryDescrBase.check_parent_is_not_self 3 1 0 67%
bioimageio/spec/model/v0_4.py KerasHdf5WeightsDescr._tfv 3 1 0 67%
bioimageio/spec/model/v0_4.py OnnxWeightsDescr._ov 3 0 0 100%
bioimageio/spec/model/v0_4.py PytorchStateDictWeightsDescr.check_architecture_sha256 6 2 0 67%
bioimageio/spec/model/v0_4.py PytorchStateDictWeightsDescr._ptv 3 1 0 67%
bioimageio/spec/model/v0_4.py TorchscriptWeightsDescr._ptv 3 1 0 67%
bioimageio/spec/model/v0_4.py TensorflowJsWeightsDescr._tfv 3 1 0 67%
bioimageio/spec/model/v0_4.py TensorflowSavedModelBundleWeightsDescr._tfv 3 1 0 67%
bioimageio/spec/model/v0_4.py ParameterizedInputShape.__len__ 1 0 0 100%
bioimageio/spec/model/v0_4.py ParameterizedInputShape.matching_lengths 3 1 0 67%
bioimageio/spec/model/v0_4.py ImplicitOutputShape.__len__ 1 0 0 100%
bioimageio/spec/model/v0_4.py ImplicitOutputShape.matching_lengths 6 2 0 67%
bioimageio/spec/model/v0_4.py ScaleLinearKwargs.either_gain_or_offset 3 0 0 100%
bioimageio/spec/model/v0_4.py SigmoidDescr.kwargs 1 0 0 100%
bioimageio/spec/model/v0_4.py ZeroMeanUnitVarianceKwargs.mean_and_std_match_mode 5 2 0 60%
bioimageio/spec/model/v0_4.py ScaleRangeKwargs.min_smaller_max 3 0 0 100%
bioimageio/spec/model/v0_4.py InputTensorDescr.zero_batch_step_and_one_batch_size 12 2 0 83%
bioimageio/spec/model/v0_4.py InputTensorDescr.validate_preprocessing_kwargs 5 1 0 80%
bioimageio/spec/model/v0_4.py OutputTensorDescr.matching_halo_length 3 1 0 67%
bioimageio/spec/model/v0_4.py OutputTensorDescr.validate_postprocessing_kwargs 7 2 0 71%
bioimageio/spec/model/v0_4.py package_weights 11 1 0 91%
bioimageio/spec/model/v0_4.py ModelDescr.unique_tensor_descr_names 4 1 0 75%
bioimageio/spec/model/v0_4.py ModelDescr.unique_io_names 4 1 0 75%
bioimageio/spec/model/v0_4.py ModelDescr.minimum_shape2valid_output 17 0 0 100%
bioimageio/spec/model/v0_4.py ModelDescr._get_min_shape 20 0 1 100%
bioimageio/spec/model/v0_4.py ModelDescr.validate_tensor_references_in_inputs 10 2 0 80%
bioimageio/spec/model/v0_4.py ModelDescr.validate_tensor_references_in_outputs 8 3 0 62%
bioimageio/spec/model/v0_4.py ModelDescr.ignore_url_parent 3 0 0 100%
bioimageio/spec/model/v0_4.py ModelDescr._convert_from_older_format 2 0 0 100%
bioimageio/spec/model/v0_4.py ModelDescr.get_input_test_arrays 3 3 0 0%
bioimageio/spec/model/v0_4.py ModelDescr.get_output_test_arrays 3 3 0 0%
bioimageio/spec/model/v0_4.py (no function) 397 0 18 100%
bioimageio/spec/model/v0_5.py _normalize_axis_id 5 1 0 80%
bioimageio/spec/model/v0_5.py _is_batch 1 0 0 100%
bioimageio/spec/model/v0_5.py _is_not_batch 1 0 0 100%
bioimageio/spec/model/v0_5.py ParameterizedSize.validate_size 5 2 0 60%
bioimageio/spec/model/v0_5.py ParameterizedSize.get_size 1 0 0 100%
bioimageio/spec/model/v0_5.py ParameterizedSize.get_n 1 0 0 100%
bioimageio/spec/model/v0_5.py DataDependentSize._validate_max_gt_min 3 1 0 67%
bioimageio/spec/model/v0_5.py DataDependentSize.validate_size 5 2 0 60%
bioimageio/spec/model/v0_5.py SizeReference.get_size 13 4 1 69%
bioimageio/spec/model/v0_5.py SizeReference._get_unit 1 1 0 0%
bioimageio/spec/model/v0_5.py BatchAxis.scale 1 1 0 0%
bioimageio/spec/model/v0_5.py BatchAxis.concatenable 1 1 0 0%
bioimageio/spec/model/v0_5.py BatchAxis.unit 1 1 0 0%
bioimageio/spec/model/v0_5.py ChannelAxis.size 1 0 0 100%
bioimageio/spec/model/v0_5.py ChannelAxis.concatenable 1 1 0 0%
bioimageio/spec/model/v0_5.py ChannelAxis.scale 1 1 0 0%
bioimageio/spec/model/v0_5.py ChannelAxis.unit 1 1 0 0%
bioimageio/spec/model/v0_5.py IndexAxisBase.scale 1 1 0 0%
bioimageio/spec/model/v0_5.py IndexAxisBase.unit 1 1 0 0%
bioimageio/spec/model/v0_5.py _get_halo_axis_discriminator_value 3 0 0 100%
bioimageio/spec/model/v0_5.py NominalOrOrdinalDataDescr._validate_values_match_type 15 5 0 67%
bioimageio/spec/model/v0_5.py NominalOrOrdinalDataDescr.range 3 3 0 0%
bioimageio/spec/model/v0_5.py ScaleLinearKwargs._validate 3 1 0 67%
bioimageio/spec/model/v0_5.py ScaleLinearAlongAxisKwargs._validate 11 5 0 55%
bioimageio/spec/model/v0_5.py SigmoidDescr.kwargs 1 0 0 100%
bioimageio/spec/model/v0_5.py FixedZeroMeanUnitVarianceAlongAxisKwargs._mean_and_std_match 3 1 0 67%
bioimageio/spec/model/v0_5.py ScaleRangeKwargs.min_smaller_max 3 1 0 67%
bioimageio/spec/model/v0_5.py TensorDescrBase.shape 1 1 0 0%
bioimageio/spec/model/v0_5.py TensorDescrBase._validate_axes 10 2 0 80%
bioimageio/spec/model/v0_5.py TensorDescrBase._validate_sample_tensor 22 2 1 91%
bioimageio/spec/model/v0_5.py TensorDescrBase.dtype 3 1 0 67%
bioimageio/spec/model/v0_5.py TensorDescrBase._check_data_type_across_channels 6 0 0 100%
bioimageio/spec/model/v0_5.py TensorDescrBase._check_data_matches_channelaxis 11 2 0 82%
bioimageio/spec/model/v0_5.py TensorDescrBase.get_axis_sizes_for_array 3 1 0 67%
bioimageio/spec/model/v0_5.py InputTensorDescr._validate_preprocessing_kwargs 17 3 0 82%
bioimageio/spec/model/v0_5.py convert_axes 56 21 0 62%
bioimageio/spec/model/v0_5.py _axes_letters_to_ids 3 1 0 67%
bioimageio/spec/model/v0_5.py _get_complement_v04_axis 7 7 0 0%
bioimageio/spec/model/v0_5.py _convert_proc 41 29 1 29%
bioimageio/spec/model/v0_5.py _InputTensorConv._convert 8 0 0 100%
bioimageio/spec/model/v0_5.py OutputTensorDescr._validate_postprocessing_kwargs 15 5 0 67%
bioimageio/spec/model/v0_5.py _OutputTensorConv._convert 5 1 0 80%
bioimageio/spec/model/v0_5.py validate_tensors 38 9 1 76%
bioimageio/spec/model/v0_5.py validate_tensors.e_msg 1 1 0 0%
bioimageio/spec/model/v0_5.py _ArchFileConv._convert 8 4 0 50%
bioimageio/spec/model/v0_5.py _ArchLibConv._convert 3 3 0 0%
bioimageio/spec/model/v0_5.py WeightsEntryDescrBase.check_parent_is_not_self 3 1 0 67%
bioimageio/spec/model/v0_5.py WeightsDescr.check_entries 15 2 0 87%
bioimageio/spec/model/v0_5.py WeightsDescr.__getitem__ 16 16 0 0%
bioimageio/spec/model/v0_5.py WeightsDescr.available_formats 1 1 0 0%
bioimageio/spec/model/v0_5.py WeightsDescr.missing_formats 1 1 0 0%
bioimageio/spec/model/v0_5.py ModelDescr._validate_documentation 8 0 0 100%
bioimageio/spec/model/v0_5.py ModelDescr._validate_input_axes 6 0 0 100%
bioimageio/spec/model/v0_5.py ModelDescr._validate_axis 28 11 1 61%
bioimageio/spec/model/v0_5.py ModelDescr._validate_test_tensors 17 2 0 88%
bioimageio/spec/model/v0_5.py ModelDescr._validate_tensor_references_in_proc_kwargs 17 4 0 76%
bioimageio/spec/model/v0_5.py ModelDescr._validate_tensor_ids 10 2 0 80%
bioimageio/spec/model/v0_5.py ModelDescr._get_axes_with_parameterized_size 1 1 0 0%
bioimageio/spec/model/v0_5.py ModelDescr._get_axes_with_independent_size 1 0 0 100%
bioimageio/spec/model/v0_5.py ModelDescr._validate_output_axes 7 0 0 100%
bioimageio/spec/model/v0_5.py ModelDescr._validate_parent_is_not_self 3 1 0 67%
bioimageio/spec/model/v0_5.py ModelDescr._add_default_cover 8 6 0 25%
bioimageio/spec/model/v0_5.py ModelDescr.get_input_test_arrays 3 3 0 0%
bioimageio/spec/model/v0_5.py ModelDescr.get_output_test_arrays 3 3 0 0%
bioimageio/spec/model/v0_5.py ModelDescr.get_batch_size 12 12 0 0%
bioimageio/spec/model/v0_5.py ModelDescr.get_output_tensor_sizes 4 4 0 0%
bioimageio/spec/model/v0_5.py ModelDescr.get_ns 10 10 1 0%
bioimageio/spec/model/v0_5.py ModelDescr.get_tensor_sizes 2 2 0 0%
bioimageio/spec/model/v0_5.py ModelDescr.get_axis_sizes 29 2 0 93%
bioimageio/spec/model/v0_5.py ModelDescr.get_axis_sizes.get_axis_size 31 7 1 77%
bioimageio/spec/model/v0_5.py ModelDescr._convert 2 0 0 100%
bioimageio/spec/model/v0_5.py ModelDescr.convert_from_old_format_wo_validation 20 1 0 95%
bioimageio/spec/model/v0_5.py _ModelConv._convert 7 0 3 100%
bioimageio/spec/model/v0_5.py _ModelConv._convert.conv_authors 2 0 0 100%
bioimageio/spec/model/v0_5.py generate_covers 16 16 0 0%
bioimageio/spec/model/v0_5.py generate_covers.squeeze 4 4 0 0%
bioimageio/spec/model/v0_5.py generate_covers.normalize 4 4 0 0%
bioimageio/spec/model/v0_5.py generate_covers.to_2d_image 67 67 0 0%
bioimageio/spec/model/v0_5.py generate_covers.create_diagonal_split_image 12 12 0 0%
bioimageio/spec/model/v0_5.py (no function) 596 0 32 100%
bioimageio/spec/notebook/__init__.py (no function) 9 0 0 100%
bioimageio/spec/notebook/v0_2.py (no function) 36 0 2 100%
bioimageio/spec/notebook/v0_3.py (no function) 37 0 2 100%
bioimageio/spec/partner_utils/__init__.py (no function) 0 0 0 100%
bioimageio/spec/partner_utils/imjoy/__init__.py (no function) 2 0 0 100%
bioimageio/spec/partner_utils/imjoy/_plugin_parser.py dotdict.__deepcopy__ 1 1 0 0%
bioimageio/spec/partner_utils/imjoy/_plugin_parser.py parse_imjoy_plugin 48 48 0 0%
bioimageio/spec/partner_utils/imjoy/_plugin_parser.py convert_config_to_rdf 29 29 0 0%
bioimageio/spec/partner_utils/imjoy/_plugin_parser.py get_plugin_as_rdf 5 5 0 0%
bioimageio/spec/partner_utils/imjoy/_plugin_parser.py enrich_partial_rdf_with_imjoy_plugin 25 25 0 0%
bioimageio/spec/partner_utils/imjoy/_plugin_parser.py (no function) 23 0 0 100%
bioimageio/spec/summary.py ErrorEntry.traceback_rich 1 1 0 0%
bioimageio/spec/summary.py ErrorEntry.model_post_init 8 7 0 12%
bioimageio/spec/summary.py WarningEntry.severity_name 1 1 0 0%
bioimageio/spec/summary.py format_loc 14 6 1 57%
bioimageio/spec/summary.py ValidationDetail._save_conda_compare 1 0 0 100%
bioimageio/spec/summary.py ValidationDetail._load_legacy 5 1 0 80%
bioimageio/spec/summary.py ValidationDetail.conda_compare 13 11 0 15%
bioimageio/spec/summary.py ValidationDetail.status_icon 3 1 0 67%
bioimageio/spec/summary.py ValidationSummary._save_conda_list 1 0 0 100%
bioimageio/spec/summary.py ValidationSummary.conda_list 4 0 0 100%
bioimageio/spec/summary.py ValidationSummary.status_icon 5 1 0 80%
bioimageio/spec/summary.py ValidationSummary.errors 1 0 0 100%
bioimageio/spec/summary.py ValidationSummary.warnings 1 0 0 100%
bioimageio/spec/summary.py ValidationSummary.format 1 0 0 100%
bioimageio/spec/summary.py ValidationSummary.format_html 2 2 0 0%
bioimageio/spec/summary.py ValidationSummary.display 9 4 0 56%
bioimageio/spec/summary.py ValidationSummary.add_detail 4 0 1 100%
bioimageio/spec/summary.py ValidationSummary.log 11 11 0 0%
bioimageio/spec/summary.py ValidationSummary.save 18 6 0 67%
bioimageio/spec/summary.py ValidationSummary.save_json 4 0 0 100%
bioimageio/spec/summary.py ValidationSummary.save_markdown 4 0 0 100%
bioimageio/spec/summary.py ValidationSummary.save_html 4 4 0 0%
bioimageio/spec/summary.py ValidationSummary.load_json 2 0 0 100%
bioimageio/spec/summary.py ValidationSummary._convert_dict 3 1 0 67%
bioimageio/spec/summary.py ValidationSummary._format 1 0 0 100%
bioimageio/spec/summary.py _format_summary 33 8 0 76%
bioimageio/spec/summary.py _format_summary.add_part 3 0 0 100%
bioimageio/spec/summary.py _format_summary.add_section 4 4 1 0%
bioimageio/spec/summary.py _format_summary.header_to_tag 1 1 0 0%
bioimageio/spec/summary.py _format_summary.add_as_details_below 10 10 0 0%
bioimageio/spec/summary.py _format_summary.add_as_details_below.make_link 7 7 1 0%
bioimageio/spec/summary.py _format_summary.format_code 12 12 0 0%
bioimageio/spec/summary.py _format_summary.format_traceback 9 9 1 0%
bioimageio/spec/summary.py _format_summary.format_text 3 1 0 67%
bioimageio/spec/summary.py _format_summary.get_info_table 11 2 0 82%
bioimageio/spec/summary.py _format_summary.get_details_table 18 8 0 56%
bioimageio/spec/summary.py _format_summary.get_details_table.append_detail 9 1 0 89%
bioimageio/spec/summary.py _format_md_table 8 0 0 100%
bioimageio/spec/summary.py _format_html_table 6 6 0 0%
bioimageio/spec/summary.py _format_html_table.get_line 1 1 0 0%
bioimageio/spec/summary.py (no function) 123 0 0 100%
bioimageio/spec/utils.py get_spdx_licenses 2 0 0 100%
bioimageio/spec/utils.py (no function) 19 0 0 100%
Total   5349 1060 110 80%

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