Installation

Via Conda

The bioimageio.core package can be installed from conda-forge via

conda install -c conda-forge bioimageio.core

If you do not install any additional deep learning (DL) libraries, you will only be able to use general convenience functionality, but model inference will be unavailable. To install additional deep learning libraries add pytorch, onnxruntime, keras or tensorflow.

Deeplearning frameworks to consider installing alongside bioimageio.core:

• Pytorch/Torchscript
• TensorFlow
• ONNXRuntime

Example for installing bioimageio.core via conda with additional DL frameworks:

conda install -c conda-forge bioimageio.core pytorch torchvision onnxruntime

Via pip

The package is also available via pip (e.g. with recommended extras onnx and pytorch):

pip install "bioimageio.core[pytorch,onnx]"