Skip to content

Core Compatibility Report: zestful-bug/v0¤

🟡 bioimageio format validation
status valid-format
source https://hypha.aicell.io/bioimage-io/artifacts/zestful-bug/files/rdf.yaml?version=v0
id zestful-bug
format version model 0.5.6
bioimageio.spec 0.5.6.0
Location Details
✔️ Successfully created `ModelDescr` instance.
✔️ bioimageio.spec format validation model 0.5.6
name
Name longer than 64 characters.
inputs.0.sample_tensor
Needs to be filled for FAIR compliance
outputs.0.sample_tensor
Needs to be filled for FAIR compliance
weights.pytorch_state_dict Reproduce test outputs from test inputs (pytorch_state_dict)
weights.pytorch_state_dict
Output 'output0' disagrees with 1045282 of 1048576 expected values (996858.6 ppm).
 Max relative difference: 3.54e+04 (= \|-1.81e-01 - 4.12e-06\|/\|4.12e-06 + 1e-6\|) at {'batch': np.int64(0), 'channel': np.int64(0), 'y': np.int64(268), 'x': np.int64(754)}
 Max absolute difference not accounted for by relative tolerance: 1.33e+00 (= \|5.3560781e-01 - 1.8676397e+00\|) at {'batch': np.int64(0), 'channel': np.int64(0), 'y': np.int64(153), 'x': np.int64(466)}
 Saved actual output to actual_output_output0_pytorch_state_dict.npy.
weights.pytorch_state_dict
recommended conda environment (Reproduce test outputs from test inputs (pytorch_state_dict))
%YAML 1.2
---
name: biapy
channels:
  - conda-forge
  - nodefaults
dependencies:
  - pip
  - pip:
      - timm==1.0.14
  - conda-forge::bioimageio.core
  - python>=3.10
weights.pytorch_state_dict
conda compare (Reproduce test outputs from test inputs (pytorch_state_dict))
Success. All the packages in the specification file are present in the environment with matching
version and build string.