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Core Compatibility Report: happy-elephant/v0¤

🟡 bioimageio format validation
status valid-format
source https://hypha.aicell.io/bioimage-io/artifacts/happy-elephant/files/rdf.yaml?version=v0
id happy-elephant
version 0.1.0
applied format model 0.5.10
bioimageio.spec 0.5.10.2
Location Details
✔️ Successfully created `ModelDescr` instance.
✔️ bioimageio.spec format validation model 0.5.10
⚠ documentation 
No '# Validation' (sub)section found in doc.md.
⚠ inputs.0.sample_tensor 
Needs to be filled for FAIR compliance
⚠ outputs.0.sample_tensor 
Needs to be filled for FAIR compliance
✔️ weights.pytorch_state_dict Created conda environment '57cd7396fb1fb1fec5b137531bd6ae0f4389ff84dd4c0587265c52b1aab8f614'
❌ run 'bioimageio test' command
❌ 
test command 'conda run -n 57cd7396fb1fb1fec5b137531bd6ae0f4389ff84dd4c0587265c52b1aab8f614 bioimageio test https://hypha.aicell.io/bioimage-io/artifacts/happy-elephant/files/rdf.yaml?version=v0 --summary-path=/tmp/tmp26tu17c7/pytorch_state_dict/summary.json --determinism=full --weight-format=pytorch_state_dict' did not produce a summary file at /tmp/tmp26tu17c7/pytorch_state_dict/summary.json
 
recommended conda environment (run 'bioimageio test' command)
See Recommended Conda Environment 1. 
conda compare (run 'bioimageio test' command)
 
/usr/share/miniconda/lib/python3.13/site-packages/conda/env/env.py:288: FutureWarning: The
environment file is not fully CEP 24 compliant is deprecated and will be removed in 26.9. In the
future, this configuration will be rejected. Please fix the following errors in order to make
the configuration valid:    - Invalid type for 'name', expected a str   deprecated.topic(
bioimageio.core not found cellpose not found cuda not found imagecodecs not found pip not found
python not found pytorch not found setuptools not found torchvision not found matplotlib not
found tqdm not found
 
%YAML 1.2
---
channels:
  - pytorch
  - nvidia
  - conda-forge
  - nodefaults
dependencies:
  - bioimageio.core
  - cellpose
  - cuda=11.8
  - imagecodecs
  - pip
  - python=3.8
  - pytorch
  - setuptools
  - torchvision
  - pip:
      - matplotlib
      - tqdm