Core Compatibility Report: merry-gorilla/v0
| ✔️ |
bioimageio format validation |
| status |
passed |
| source |
https://hypha.aicell.io/bioimage-io/artifacts/merry-gorilla/files/rdf.yaml?version=v0 |
| id |
merry-gorilla |
| format version |
model 0.5.6 |
| bioimageio.spec |
0.5.6.0 |
|
Location |
Details |
| ✔️ |
|
Successfully created `ModelDescr` instance. |
| ✔️ |
|
bioimageio.spec format validation model 0.5.6 |
| ⚠ |
inputs.0.sample_tensor |
Needs to be filled for FAIR compliance |
| ⚠ |
outputs.0.sample_tensor |
Needs to be filled for FAIR compliance |
| ✔️ |
weights.pytorch_state_dict |
Reproduce test outputs from test inputs (pytorch_state_dict) |
| ⚠ |
weights.pytorch_state_dict |
Output 'masks' disagrees with 1 of 2764800 expected values (0.4 ppm).
Max relative difference: 1.00e+00 (= \|0.00e+00 - 9.40e+01\|/\|9.40e+01 + 1e-6\|) at {'batch': np.int64(0), 'y': np.int64(645), 'x': np.int64(1504)}
Max absolute difference not accounted for by relative tolerance: 9.40e+01 (= \|0.0000000e+00 - 9.4000000e+01\|) at {'batch': np.int64(0), 'y': np.int64(645), 'x': np.int64(1504)}
Saved actual output to actual_output_masks_pytorch_state_dict.npy. |
|
weights.pytorch_state_dict |
recommended conda environment (Reproduce test outputs from test inputs (pytorch_state_dict)) |
|
|
See Recommended Conda Environment 1. |
|
weights.pytorch_state_dict |
conda compare (Reproduce test outputs from test inputs (pytorch_state_dict)) |
|
|
Success. All the packages in the specification file are present in the environment with matching
version and build string. |
| ✔️ |
weights.pytorch_state_dict |
Run pytorch_state_dict inference for inputs with batch_size: 1 and size parameter n: 0 |
| ✔️ |
weights.pytorch_state_dict |
Run pytorch_state_dict inference for inputs with batch_size: 2 and size parameter n: 0 |
Recommended Conda Environment 1
%YAML 1.2
---
name: cellpose
channels:
- pytorch
- conda-forge
- nodefaults
dependencies:
- bioimageio.core
- imagecodecs
- pip
- python>=3.9
- pytorch
- setuptools
- torchvision
- pip:
- cellpose==3.1.0