Core Compatibility Report: happy-elephant/v0
| 🟡 |
bioimageio format validation |
| status |
valid-format |
| source |
https://hypha.aicell.io/bioimage-io/artifacts/happy-elephant/files/rdf.yaml?version=v0 |
| id |
happy-elephant |
| format version |
model 0.5.6 |
| bioimageio.spec |
0.5.6.0 |
|
Location |
Details |
| ✔️ |
|
Successfully created `ModelDescr` instance. |
| ✔️ |
|
bioimageio.spec format validation model 0.5.6 |
| ⚠ |
documentation |
No '# Validation' (sub)section found in doc.md. |
| ⚠ |
inputs.0.sample_tensor |
Needs to be filled for FAIR compliance |
| ⚠ |
outputs.0.sample_tensor |
Needs to be filled for FAIR compliance |
| ❌ |
|
run 'bioimageio test' command |
| ❌ |
|
test command 'conda run -n 57cd7396fb1fb1fec5b137531bd6ae0f4389ff84dd4c0587265c52b1aab8f614 bioimageio test https://hypha.aicell.io/bioimage-io/artifacts/happy-elephant/files/rdf.yaml?version=v0 --summary-path=/tmp/tmpwdcm91qp/pytorch_state_dict/summary.json --determinism=full --stop-early' did not produce a summary file at /tmp/tmpwdcm91qp/pytorch_state_dict/summary.json |
|
|
|
|
|
recommended conda environment (run 'bioimageio test' command) |
|
|
See Recommended Conda Environment 1. |
|
|
conda compare (run 'bioimageio test' command) |
|
|
bioimageio.core not found cellpose not found cuda not found imagecodecs not found pip not found
python not found pytorch not found setuptools not found torchvision not found matplotlib not
found tqdm not found |
Recommended Conda Environment 1
%YAML 1.2
---
channels:
- pytorch
- nvidia
- conda-forge
- nodefaults
dependencies:
- bioimageio.core
- cellpose
- cuda=11.8
- imagecodecs
- pip
- python=3.8
- pytorch
- setuptools
- torchvision
- pip:
- matplotlib
- tqdm