Core Compatibility Report: emotional-cricket/v0¤
| 🟡 | bioimageio format validation |
|---|---|
| status | valid-format |
| source | https://hypha.aicell.io/bioimage-io/artifacts/emotional-cricket/files/rdf.yaml?version=v0 |
| id | emotional-cricket |
| version | 1.1 |
| applied format | model 0.5.7 |
| bioimageio.spec | 0.5.7.4 |
| Location | Details | |
|---|---|---|
| ✔️ | Successfully created `ModelDescr` instance. | |
| ✔️ | bioimageio.spec format validation model 0.5.7 | |
| ⚠ | documentation |
No '# Validation' (sub)section found in unet3d.md. |
| ⚠ | weights |
Exactly one weights entry may not specify the `parent` field (got 2). That entry is considered the original set of model weights. Other weight formats are created through conversion of the orignal or already converted weights. They have to reference the weights format they were converted from as their `parent`. |
| ❌ | weights.pytorch_state_dict |
Conda environment creation |
| ❌ | weights.pytorch_state_dict |
Command '['conda', 'env', 'create', '--yes', '--file=/tmp/tmplv0l185t/pytorch_state_dict/env.yaml', '--name=1f28e1b5cfbae3dc5bb2ea29a6c74b6092c101455dc61ccccc253e32dd6d360b', '--quiet']' returned non-zero exit status 1. |
| See Traceback 1. | ||
weights.pytorch_state_dict |
recommended conda environment (Conda environment creation) |
|
%YAML 1.2
---
channels:
- conda-forge
- nodefaults
dependencies:
- conda-forge::bioimageio.core>=0.9.4
- mkl ==2024.0.0
- numpy <2
- pip
- pytorch==1.12.1
- setuptools <70.0.0
- torchaudio==0.12.1
- torchvision==0.13.1
|
||
weights.pytorch_state_dict |
conda compare (Conda environment creation) |
|
bioimageio.core not found mkl not found numpy not found pip not found pytorch not found setuptools not found torchaudio not found torchvision not found |
||
| ❌ | weights.torchscript |
Conda environment creation |
| ❌ | weights.torchscript |
Command '['conda', 'env', 'create', '--yes', '--file=/tmp/tmplv0l185t/torchscript/env.yaml', '--name=b49d52ec0351d44c2af34edb0ba94ae6a5e634ceefd82693b7d0b3d7013228c0', '--quiet']' returned non-zero exit status 1. |
| See Traceback 2. | ||
weights.torchscript |
recommended conda environment (Conda environment creation) |
|
%YAML 1.2
---
channels:
- conda-forge
- nodefaults
dependencies:
- conda-forge::bioimageio.core>=0.9.4
- mkl ==2024.0.0
- numpy <2
- pip
- pytorch==1.13.0
- setuptools <70.0.0
- torchaudio==0.13.0
- torchvision==0.14.0
|
||
weights.torchscript |
conda compare (Conda environment creation) |
|
bioimageio.core not found mkl not found numpy not found pip not found pytorch not found setuptools not found torchaudio not found torchvision not found |
Traceback 1
╭─────────────────────────────── Traceback (most recent call last) ────────────────────────────────╮
│ /home/runner/.local/lib/python3.12/site-packages/bioimageio/core/_resource_tests.py:428 in _test │
│ │
│ 425 │ │ raise RuntimeError("Conda not available") from e │
│ 426 │ │
│ 427 │ try: │
│ ❱ 428 │ │ run_command([CONDA_CMD, "run", "-n", env_name, "python", "--version"]) │
│ 429 │ except Exception as e: │
│ 430 │ │ working_dir.mkdir(parents=True, exist_ok=True) │
│ 431 │ │ path = working_dir / "env.yaml" │
│ │
│ /home/runner/.local/lib/python3.12/site-packages/bioimageio/core/_resource_tests.py:198 in defau │
│ │
│ 195 │
│ 196 def default_run_command(args: Sequence[str]): │
│ 197 │ logger.info("running '{}'...", " ".join(args)) │
│ ❱ 198 │ _ = subprocess.check_call(args) │
│ 199 │
│ 200 │
│ 201 def test_description( │
│ │
│ /usr/lib/python3.12/subprocess.py:413 in check_call │
│ │
│ 410 │ │ cmd = kwargs.get("args") │
│ 411 │ │ if cmd is None: │
│ 412 │ │ │ cmd = popenargs[0] │
│ ❱ 413 │ │ raise CalledProcessError(retcode, cmd) │
│ 414 │ return 0 │
│ 415 │
│ 416 │
╰──────────────────────────────────────────────────────────────────────────────────────────────────╯
CalledProcessError: Command '['conda', 'run', '-n', '1f28e1b5cfbae3dc5bb2ea29a6c74b6092c101455dc61ccccc253e32dd6d360b', 'python', '--version']' returned non-zero exit status 1.
During handling of the above exception, another exception occurred:
╭─────────────────────────────── Traceback (most recent call last) ────────────────────────────────╮
│ /home/runner/.local/lib/python3.12/site-packages/bioimageio/core/_resource_tests.py:435 in _test │
│ │
│ 432 │ │ try: │
│ 433 │ │ │ _ = path.write_bytes(encoded_env) │
│ 434 │ │ │ logger.debug("written conda env to {}", path) │
│ ❱ 435 │ │ │ run_command( │
│ 436 │ │ │ │ [ │
│ 437 │ │ │ │ │ CONDA_CMD, │
│ 438 │ │ │ │ │ "env", │
│ │
│ /home/runner/.local/lib/python3.12/site-packages/bioimageio/core/_resource_tests.py:198 in defau │
│ │
│ 195 │
│ 196 def default_run_command(args: Sequence[str]): │
│ 197 │ logger.info("running '{}'...", " ".join(args)) │
│ ❱ 198 │ _ = subprocess.check_call(args) │
│ 199 │
│ 200 │
│ 201 def test_description( │
│ │
│ /usr/lib/python3.12/subprocess.py:413 in check_call │
│ │
│ 410 │ │ cmd = kwargs.get("args") │
│ 411 │ │ if cmd is None: │
│ 412 │ │ │ cmd = popenargs[0] │
│ ❱ 413 │ │ raise CalledProcessError(retcode, cmd) │
│ 414 │ return 0 │
│ 415 │
│ 416 │
╰──────────────────────────────────────────────────────────────────────────────────────────────────╯
CalledProcessError: Command '['conda', 'env', 'create', '--yes', '--file=/tmp/tmplv0l185t/pytorch_state_dict/env.yaml', '--name=1f28e1b5cfbae3dc5bb2ea29a6c74b6092c101455dc61ccccc253e32dd6d360b', '--quiet']' returned non-zero exit status 1.
Traceback 2
╭─────────────────────────────── Traceback (most recent call last) ────────────────────────────────╮
│ /home/runner/.local/lib/python3.12/site-packages/bioimageio/core/_resource_tests.py:428 in _test │
│ │
│ 425 │ │ raise RuntimeError("Conda not available") from e │
│ 426 │ │
│ 427 │ try: │
│ ❱ 428 │ │ run_command([CONDA_CMD, "run", "-n", env_name, "python", "--version"]) │
│ 429 │ except Exception as e: │
│ 430 │ │ working_dir.mkdir(parents=True, exist_ok=True) │
│ 431 │ │ path = working_dir / "env.yaml" │
│ │
│ /home/runner/.local/lib/python3.12/site-packages/bioimageio/core/_resource_tests.py:198 in defau │
│ │
│ 195 │
│ 196 def default_run_command(args: Sequence[str]): │
│ 197 │ logger.info("running '{}'...", " ".join(args)) │
│ ❱ 198 │ _ = subprocess.check_call(args) │
│ 199 │
│ 200 │
│ 201 def test_description( │
│ │
│ /usr/lib/python3.12/subprocess.py:413 in check_call │
│ │
│ 410 │ │ cmd = kwargs.get("args") │
│ 411 │ │ if cmd is None: │
│ 412 │ │ │ cmd = popenargs[0] │
│ ❱ 413 │ │ raise CalledProcessError(retcode, cmd) │
│ 414 │ return 0 │
│ 415 │
│ 416 │
╰──────────────────────────────────────────────────────────────────────────────────────────────────╯
CalledProcessError: Command '['conda', 'run', '-n', 'b49d52ec0351d44c2af34edb0ba94ae6a5e634ceefd82693b7d0b3d7013228c0', 'python', '--version']' returned non-zero exit status 1.
During handling of the above exception, another exception occurred:
╭─────────────────────────────── Traceback (most recent call last) ────────────────────────────────╮
│ /home/runner/.local/lib/python3.12/site-packages/bioimageio/core/_resource_tests.py:435 in _test │
│ │
│ 432 │ │ try: │
│ 433 │ │ │ _ = path.write_bytes(encoded_env) │
│ 434 │ │ │ logger.debug("written conda env to {}", path) │
│ ❱ 435 │ │ │ run_command( │
│ 436 │ │ │ │ [ │
│ 437 │ │ │ │ │ CONDA_CMD, │
│ 438 │ │ │ │ │ "env", │
│ │
│ /home/runner/.local/lib/python3.12/site-packages/bioimageio/core/_resource_tests.py:198 in defau │
│ │
│ 195 │
│ 196 def default_run_command(args: Sequence[str]): │
│ 197 │ logger.info("running '{}'...", " ".join(args)) │
│ ❱ 198 │ _ = subprocess.check_call(args) │
│ 199 │
│ 200 │
│ 201 def test_description( │
│ │
│ /usr/lib/python3.12/subprocess.py:413 in check_call │
│ │
│ 410 │ │ cmd = kwargs.get("args") │
│ 411 │ │ if cmd is None: │
│ 412 │ │ │ cmd = popenargs[0] │
│ ❱ 413 │ │ raise CalledProcessError(retcode, cmd) │
│ 414 │ return 0 │
│ 415 │
│ 416 │
╰──────────────────────────────────────────────────────────────────────────────────────────────────╯
CalledProcessError: Command '['conda', 'env', 'create', '--yes', '--file=/tmp/tmplv0l185t/torchscript/env.yaml', '--name=b49d52ec0351d44c2af34edb0ba94ae6a5e634ceefd82693b7d0b3d7013228c0', '--quiet']' returned non-zero exit status 1.