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Core Compatibility Report: affectionate-cow/v0¤

🟡 bioimageio format validation
status valid-format
source https://hypha.aicell.io/bioimage-io/artifacts/affectionate-cow/files/rdf.yaml?version=v0
id affectionate-cow
format version model 0.5.6
bioimageio.spec 0.5.6.0
Location Details
✔️ Successfully created `ModelDescr` instance.
✔️ bioimageio.spec format validation model 0.5.6
⚠ documentation 
No '# Validation' (sub)section found in doc.md.
⚠ inputs.0.sample_tensor 
Needs to be filled for FAIR compliance
⚠ outputs.0.sample_tensor 
Needs to be filled for FAIR compliance
❌ run 'bioimageio test' command
❌ 
test command 'conda run -n 11aa6d8d637e1dd304527155d7d9a7655736471c58843e7524c40dd0e82c8dfa bioimageio test https://hypha.aicell.io/bioimage-io/artifacts/affectionate-cow/files/rdf.yaml?version=v0 --summary-path=/tmp/tmpy0r4uthr/pytorch_state_dict/summary.json --determinism=full --stop-early' did not produce a summary file at /tmp/tmpy0r4uthr/pytorch_state_dict/summary.json
 
recommended conda environment (run 'bioimageio test' command)
See Recommended Conda Environment 1. 
conda compare (run 'bioimageio test' command)
 
bioimageio.core not found ca-certificates not found certifi not found cuda not found czifile not
found ipykernel not found ipython not found isort not found matplotlib not found nbconvert not
found nd2reader not found openssl not found pip not found python not found pytorch-lightning not
found pytorch not found scikit-learn not found seaborn not found tensorboard not found tifffile
not found torchvision not found wandb not found yapf not found zarr not found albumentations not
found //github.com/juglab/usplit.git@bioimage_io not found matplotlib not found ml-collections
not found networkx not found opencv-python-headless not found pillow not found scikit-image not
found scikit-learn not found tifffile not found virtualenv not found
 
%YAML 1.2
---
channels:
  - pytorch
  - nvidia
  - anaconda
  - conda-forge
  - nodefaults
dependencies:
  - bioimageio.core
  - ca-certificates
  - certifi
  - cuda=11.6.1
  - czifile
  - ipykernel
  - ipython
  - isort
  - matplotlib
  - nbconvert
  - nd2reader
  - openssl
  - pip
  - python=3.9
  - pytorch-lightning
  - pytorch==1.13.1
  - scikit-learn
  - seaborn
  - tensorboard
  - tifffile
  - torchvision==0.14.1
  - wandb
  - yapf
  - zarr
  - pip:
      - albumentations==1.4.8
      - git+https://github.com/juglab/uSplit.git@bioimage_io
      - matplotlib
      - ml-collections==0.1.1
      - networkx==3.2.1
      - opencv-python-headless==4.10.0.82
      - pillow==10.3.0
      - scikit-image==0.22.0
      - scikit-learn==1.5.0
      - tifffile==2024.5.22
      - virtualenv==20.26.2